Query= MSMg01no195_j02.b1 MSMg01no195_j02.b1 CHROMAT_FILE:
MSMg01no195_j02.b1 PHD_FILE: MSMg01no195_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:50 2005
(179 letters)
>mm_chr11_3203687_3204265
Length = 579
Score = 339 bits (175), Expect = 8e-98
Identities = 178/179 (99%)
Strand = Plus / Plus
Query: 1 cttgctgggagaagagagatgcagaagagaagggtcttgccttttaaattaggaatgaat 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cttgctgggagaagagagatgcagaagagaaaggtcttgccttttaaattaggaatgaat 260
Query: 61 gaatgtcaattctgaaaaaaatgatagaaaggaaaataaaaagttacactattttgagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgtcaattctgaaaaaaatgatagaaaggaaaataaaaagttacactattttgagtt 320
Query: 121 agaacccagaaaagtgggcaggcttagctgcaaaggtatgaaagaactgtcccagaggg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacccagaaaagtgggcaggcttagctgcaaaggtatgaaagaactgtcccagaggg 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no195_j02.g1 MSMg01no195_j02.g1 CHROMAT_FILE:
MSMg01no195_j02.g1 PHD_FILE: MSMg01no195_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:50 2005
(461 letters)
>mm_chr11_3268306_3269166
Length = 861
Score = 801 bits (414), Expect = 0.0
Identities = 447/462 (96%), Gaps = 8/462 (1%)
Strand = Plus / Minus
Query: 1 ccttagaggattcccggtagtgtccagcttgggttagatgaacttggtttggacattatc 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 469 ccttacaggattcccggtagtgtccagcttgggttagatgagcttggtttggacattatc 410
Query: 61 ccttgaggaaaacaagcacccgtttgcattataaagcaccccatgtttgaaaacttagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccttgaggaaaacaagcacccgtttgcattataaagcaccccatgtttgaaaacttagca 350
Query: 121 acaacctttgatagtaacttgcagcctcctccaaccttctgagggcttgggtcaggtgag 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 acaaccttttatagtaacttgcagcctcctccaaccttctgagggcttgggtcaggtgag 290
Query: 181 tgggtcccagctgtgacttgtttgactactctctgaggcacacactttggtactttcccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgggtcccagctgtgacttgtttgactactctctgaggcacacactttggtactttcccc 230
Query: 241 tcccaggtagaggaagcccccagaccccccccccccgtgagctgcgcagatcacgtgaac 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 229 tcccaggtagaggaagcccccaga-------cccccgtgagctgcgcagatcacgtgaac 177
Query: 301 tgacaaccag-cccccccccccagcccccactggagctgcatcagtgtgctctattgcta 359
|||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 176 tgacaaccagccccccccccccagcccccaccggagctgcatcagtgtgctctgttgcta 117
Query: 360 agcttgttacgggtctggttatttttgtaaaaacagtggagcaacatagtctacaagaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agcttgttacgggtctggttatttttgtaaaaacagtggagcaacatagtctacaagaat 57
Query: 420 tacagtgtttggcagactgtttcagcccatcggttctgagga 461
||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 56 tacagtgtttggcagactgtttcagtccatcgggtctgagga 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
