Query= MSMg01no196_g20.b1 MSMg01no196_g20.b1 CHROMAT_FILE:
MSMg01no196_g20.b1 PHD_FILE: MSMg01no196_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:58 2005
(535 letters)
>mm_chr11_102672391_102673324
Length = 934
Score = 984 bits (509), Expect = 0.0
Identities = 524/529 (99%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 7 gaattcaagaacattcacgaaccagctggaaaagtatgggattgcacattcatccacaat 66
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 207 gaattcaagaacattcaggaaccagctggaaaagtatgggattgcacattcacccacaat 266
Query: 67 gcctcttaagtggtactgtctgcattcagaaaggacagtactggtatccatgtctaaaac 126
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 gcctcttaagtggtactgtctgcattcagaaaggacagtactggtacccatgtctaaaac 326
Query: 127 agcctaagcttccatcaatcaagaattctaaatcatgttcaggcttggaaaataaacatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agcctaagcttccatcaatcaagaattctaaatcatgttcaggcttggaaaataaacatt 386
Query: 187 tccaatattaactaggattgtggaaggtctcacatcatacagcaatggcaacggtcagct 246
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387 tccaatattaactaggattgtggaaggtctcacatcatacagcaatggcaactgtcagct 446
Query: 247 ggtatacctcgtgaagcaatctttaccatgaactgaaataccactgggcccagtggcaca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtatacctcgtgaagcaatctttaccatgaactgaaataccactgggcccagtggcaca 506
Query: 307 ctcgaggcaggggcaggacagtcactgttcagtcaaggacatttggtctacacagtctct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctcgaggcaggggcaggacagtcactgttcagtcaaggacatttggtctacacagtctct 566
Query: 367 caaaaagctactcttcaacaagaaaaaactctaaaatgccatcttatggtgggtaataca 426
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 caaaaagctactcttcaacaagaaaaa-ctctaaaatgccatcttatggtgggtaataca 625
Query: 427 tttgtaattattcctaaatacagaatatttgctataagaaatcttatataacttgttata 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttgtaattattcctaaatacagaatatttgctataagaaatcttatataacttgttata 685
Query: 487 accctctataatgaaataatatacaatgactttgagagggtaggggtga 535
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 accctctataatgaaataatatacaatgactttgagagggtaggggtga 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 934
Length adjustment: 10
Effective length of query: 525
Effective length of database: 924
Effective search space: 485100
Effective search space used: 485100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_g20.g1 MSMg01no196_g20.g1 CHROMAT_FILE:
MSMg01no196_g20.g1 PHD_FILE: MSMg01no196_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:58 2005
(490 letters)
>mm_chr11_102813152_102814041
Length = 890
Score = 847 bits (438), Expect = 0.0
Identities = 478/492 (97%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 1 agcctggtctacagagcaaattccaggacagccagggctacatagaaagaccttgcctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agcctggtctacagagcaaattccaggacagccagggctacatagaaagaccttgcctca 559
Query: 61 aaaaacaaaacaaaacaaaaaactaaaaaccaaccaaacaaacaaac--aaaaaaaaccc 118
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 558 aaaaacaaaacaaaacaaaaaactaaaaaccaaacaaacaaacaaacaaaaaaaaaaccc 499
Query: 119 tcccaaacacaccgtatccaccagtagccaagctgggcctctaagccaatctctacctct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcccaaacacaccgtatccaccagtagccaagctgggcctctaagccaatctctacctct 439
Query: 179 ggtgcccatctctctatctagcccaagccagagcttcagggccagaaaacagaaatgtgc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtgcccatctctctatctagcccaagccagagcttcagggccagaaaacagaaatgtgc 379
Query: 239 cttttatatacctgggccttgatcctaaagtcctctttgtcttccctctcatgtatgtgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 378 cttttatatacctgggccttgatcctaaagtcctctttgtcttccctctcagggatgtgc 319
Query: 299 ccggcaggcatggagagatgaagggccccaatctgggctcaagaacaccagtgtcccaat 358
|||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
Sbjct: 318 ccgggagggatggagagatgaagggccccaatctgggctcaagaagaccagtgacccagt 259
Query: 359 cccgactctctctttcactggctgcgtggttcttagaagttgcttaactcctctaatcct 418
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 258 cccgactctctctttcactggctgcgtggttcttagaaattgcttaacccctctaatcct 199
Query: 419 cgctgtcctcctcctgctccgtgaggagatggcaacacttattccttagatttctagtaa 478
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccctgtcttcctcctgctccgtgaggagatggcaacacttattccttagatttctagtaa 139
Query: 479 agattcaataga 490
||||||||||||
Sbjct: 138 agattcaataga 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
