BAC Information

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BAC

Clone NameMSMg01-196O19
Chromosome11 (Build37)
Map Location 98,237,468 - 98,237,782
singlet/doubletsinglet
Overlap geneStard3
Upstream geneSocs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b
Downstream geneTcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196O19.T7 (MSMg01no196_o19.b1)MSMg01-196O19.TJ (MSMg01no196_o19.g1)
ACCAG384851AG384852
length777800
length of high quality
(start - end)		319 (54 - 372)157 (82 - 238)
definitionCHROMAT_FILE: MSMg01no196_o19.b1 PHD_FILE: MSMg01no196_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:37 2005CHROMAT_FILE: MSMg01no196_o19.g1 PHD_FILE: MSMg01no196_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATGGCAAGGGCTACCCCAAACCTAGAGCCCTCCCTG
GAGGCCACCAGTTCTGGCTAGCCAGACGAGATACACCCTATTCCTCCCTA
TTCCTGGTGCTAGCTGTTAGGGACCAGCTATGCATGACACATGAGTCTAA
GATGAATTATGTCTGTGGCAGGAAAGACTGATTCTGACTAGATGGTGTAG
CTCAGATCACAGGGGGCTTGCCTAACATGTGCAAAGCTCTGGGTTCCATC
CCCGGCACGTTATAAATCAGCACAGTGGCCCATGCTTGTAATCCCAGACT
GGGGTGGGGAGCGAACATCAGATTTTCATGGCTACCAGCATATGAAAGCC
TGGTTTAATGAAAATGAGAGCCATGCGCGGCGGTGCATTGGGAGGCAGAG
GCAGGAAGACCTCTGTGAGTTAGAGGCCAGCCTGTCTACACAGTAAGTTC
TAGGCCAGCCAAGGGCTACAGTCCCTGTCTCCAAATATAGGTGTAGGTGT
AGGCGTATCCCGCTTTTCCCCCTTCCTTCCATTTTCTTCCCTTTTTTTTC
TTCCATCTTCCTCCCCTTTCCTTTTTTTTCTTCCTTCCCTTTCCCTCCCC
CCTCATTTCAAGTCTACCCAATATCCCCCTCCACCCCTCCTTTCCCCCCT
CCCTTCCCCCCCCCTTCCCCTTTCCCCCCCCCCTCCCTCTTTTCCTCCTT
TTCCTCGCCCTTTACCCCTATTATTCT

NNTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATGTAGACCCAGCTAG
CCTCAAACTTGAACTCCATCTGCCTCTGACTCCAGAGTGCAGTAATTAAA
GGCCTGTGCCACCACTTAAAAATATATATATAAAAAAAAGTTGTGAGTTT
GTGTTTTTGTGTGTGTGTGTGTTTGTGTATAAATGNACACTGGATGCTCA
GGAACTTGAGTTTACCATTGTCTGCAATTGGCGACGTACGTTCTGGTAAT
TGCTCATATATCTGCTGTATGATTTCCATATTTTCTTTTGCATCGTTCCC
CCTCCCACATACGCTGATTTTTTTTTTTCCCCCCCCCCCCCCCTCCTGAG
TTCACTTTACCTTTCGCTTAGCTTTTCCCCCCCCCAAAAAAAAAAAAAAC
ATAATTGTTGCTCCTCTCCTAATTTATTCCATACCACATCTTTCTCCCTT
TTTCCCATTTTTTTTACCCCATCATTTTAACTTCCATTCCATTTTCCTTC
CCCCCCTTTTCCCCCCCCTTTTTTCCAAATTATTTTATATTTCTTAATTC
CCCCCCGCCACCTTTTTCTCCGTCCCAATTTTCCCTTTTTTCCCTCCATT
ATCCTCCCATTTTTACCCTTTTATCTTTCCCGCCTTTTTCCCCATTTTTC
CCCCCTTCCTTTCCCTTTCTTACTCCTCTTATCTCCTTTCCTCTCTTATC
CCGTCACCCCTGTCACTCCCTTTTACTTTTACTTTTTCACTTATTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_o19.b1 MSMg01no196_o19.b1 CHROMAT_FILE:
MSMg01no196_o19.b1 PHD_FILE: MSMg01no196_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:37 2005
         (319 letters)



>mm_chr11_98237393_98238111
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggcaagggctaccccaaacctagagccctccctggaggccaccagttctgg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattccatggcaagggttaccccaaacctagagccctccctggaggccaccagttctgg 331

                                                                       
Query: 65  ctagccagacgagatacaccctattcctccctattcctggtgctagctgttagggaccag 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctagccagacgagatagaccctattcctccctattcctggtgctagctgttagggaccag 271

                                                                       
Query: 125 ctatgcatgacacatgagtctaagatgaattatgtctgtggcaggaaagactgattctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctatgcatgacacatgagtctaagatgaattatgtctgtggcaggaaagactgattctga 211

                                                                       
Query: 185 ctagatggtgtagctcagatcacagggggcttgcctaacatgtgcaaagctctgggttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctagatggtgtagctcagatcacagggggcttgcctaacatgtgcaaagctctgggttcc 151

                                                                       
Query: 245 atccccggcacgttataaatcagcacagtggcccatgcttgtaatcccagactggggtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atccccggcacgttataaatcagcacagtggcccatgcttgtaatcccagactggggtgg 91

                          
Query: 305 ggagcgaacatcaga 319
           |||||||||||||||
Sbjct: 90  ggagcgaacatcaga 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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