Query= MSMg01no199_b24.b1 MSMg01no199_b24.b1 CHROMAT_FILE:
MSMg01no199_b24.b1 PHD_FILE: MSMg01no199_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:34 2005
(420 letters)
>mm_chr11_39531938_39532757
Length = 820
Score = 760 bits (393), Expect = 0.0
Identities = 407/419 (97%), Gaps = 12/419 (2%)
Strand = Plus / Minus
Query: 1 tacaaatctttgttacatacttttcatctcacactagttcatttatgcagcactcaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tacaaatctttgttacatacttttcatctcacactagttcatttatgcagcactcaatgg 419
Query: 61 gatttcacagtgacatcttttggcctctaaatcttagcttagagaagctacaaatttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gatttcacagtgacatcttttggcctctaaatcttagcttagagaagctacaaatttcat 359
Query: 121 gttaaacaaatcttgcttgatggaatcaattagttaattaatagtttttaattttcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gttaaacaaatcttgcttgatggaatcaattagttaattaatagtttttaattttcctgg 299
Query: 181 aacttaaaaccataatgctgaattttactccatacatttgtctacattactatttgttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aacttaaaaccataatgctgaattttactccatacatttgtctacattactatttgttaa 239
Query: 241 tataaatctacagttatctgtctataattaactcatacatctatccatctttccccatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tataaatctacagttatctgtctataattaactcatacatctatccatctttccccatct 179
Query: 301 acctaacatctctgtatatctatctatctatctatctatctatctatctatctatctatc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acctaacatctctgtatatctatctatctatctatctatctatctatctatct------- 126
Query: 361 tatctgtctatctatatgtctatctatctagcagccattcatctatctatccatttacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 -----gtctatctatatgtctatctatctagcagccattcatctatctatccatttacc 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_b24.g1 MSMg01no199_b24.g1 CHROMAT_FILE:
MSMg01no199_b24.g1 PHD_FILE: MSMg01no199_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:35 2005
(569 letters)
>mm_chr11_39453821_39454789
Length = 969
Score = 1069 bits (553), Expect = 0.0
Identities = 565/569 (99%)
Strand = Plus / Plus
Query: 1 tgctttaactgaacacaatatccaattcagataccctgcttcctaaattattattttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttaactgaacacaatatccaattcagataccctgcttcctaaattattattttgtt 260
Query: 61 agttatgtttttagtgctacctaagtcctcaagaacttgagatctatgaaaatgctatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttatgtttttagtgctacctaagtcctcaagaacttgagatctatgaaaatgctatgt 320
Query: 121 gacaatggcattatttgtacatggtttgaataaatgcatattctgcagggaaaagtccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaatggcattatttgtacatggtttgaataaatgcatattctgcagggaaaagtccta 380
Query: 181 ttacttgagcaactgaattggttggctgggtcatcatgtcatgagctttcacttcagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacttgagcaactgaattggttggctgggtcatcatgtcatgagctttcacttcagaaa 440
Query: 241 actctgtatttacatcaaagaccaaccagatgactatgaaatatatcatctaccttggca 300
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctgaaaatacatcaaagaccaaccagatgactatgaaatatatcatctaccttggca 500
Query: 301 ggtatttttctagattttatttacttaagatatagtaaaaattaaaaacctacccaaatt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ggtatttttctagattttatttacttaagatatagtaaaaattaaaaacctaaccaaatt 560
Query: 361 gtcacactgtaaatatgttttcaggaacatgagaaaaccccagttatggttttgctagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacactgtaaatatgttttcaggaacatgagaaaaccccagttatggttttgctagac 620
Query: 421 ttccaatgctaatatctaataaaatattacctggtaacttgatatattttttctggattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccaatgctaatatctaataaaatattacctggtaacttgatatattttttctggattc 680
Query: 481 ttttgtacatgtttatatatgccttctgtatcactgagttaattttactcatattttact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtacatgtttatatatgccttctgtatcactgagttaattttactcatattttact 740
Query: 541 ttatatttccttgtttttcaccttaaggg 569
|||||||||||||||||||||||||||||
Sbjct: 741 ttatatttccttgtttttcaccttaaggg 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
