Query= MSMg01no201_h06.b1 MSMg01no201_h06.b1 CHROMAT_FILE:
MSMg01no201_h06.b1 PHD_FILE: MSMg01no201_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:39 2005
(555 letters)
>mm_chr11_56136952_56137905
Length = 954
Score = 928 bits (480), Expect = 0.0
Identities = 530/554 (95%), Gaps = 16/554 (2%)
Strand = Plus / Plus
Query: 5 gaattccag---atttcctccttttttaccttgttattatcattttaattcactttaaat 61
||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattccagaacattt-ct--ttttttaccttgttattatcattttaattcactttaaat 270
Query: 62 taattttataattaccataaaatgtgatgaatttcaataaggcatttatacatattatac 121
|||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 271 taattttataattaggataaaatgtgatgaatttcaataaggcat---------ttatac 321
Query: 122 atatatgcatcagtatagctccttctaattcttcctcatcccgagctgcccgcctccacc 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atatatgcatcattatagctccttctaattcttcctcatcccgagctgcccgcctccacc 381
Query: 182 ccaacatgacctctttgcttgtcaactttctcccctcaagtagccccttaatccagaaaa 241
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccaacaagacctctttgcttgtcaactttctcccctcaagtagccccttaatccagaaaa 441
Query: 242 ttctttaatactttctcaactcattaattaccaatcacaacccattcttgtccactagtg 301
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 ttctttaatagtttctcaactcattaattaccagtcacaacccattcttgtccactagtg 501
Query: 302 ttcctataatagatacttaaagcaaatgaatcctactccacacacgtgacagctaatgtc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttcctataatagatacttaaagcaaatgaatcctactccacacacgtgacagctaatgtc 561
Query: 362 tgggttgatcacttagcaatgacacacataaggtttgcttctctgatgtcctctaacagt 421
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 562 tgggttgatcacttagcaatgacacacgtaaggtttgcttctctgatgtcctctaacagt 621
Query: 422 actccagacaactctttttatggtccagttatttccattttgccagtgtacagtgtttgt 481
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acttcagacaactctttttatggtccagttatttccattttgccagtgtacagtgtttgt 681
Query: 482 ttattaatatgtaagttgattagacttttggctgtttttaatttttgtttttttggagtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 682 ttattaatatgtaagttgattagacttttggctgtttttaatttttgtttttt-ggagtt 740
Query: 542 aattttcttttact 555
||||||||||||||
Sbjct: 741 aattttcttttact 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_h06.g1 MSMg01no201_h06.g1 CHROMAT_FILE:
MSMg01no201_h06.g1 PHD_FILE: MSMg01no201_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:39 2005
(280 letters)
>mm_chr11_56166354_56167033
Length = 680
Score = 534 bits (276), Expect = e-156
Identities = 276/276 (100%)
Strand = Plus / Minus
Query: 1 ttcctgttgtgcagtgttggacatggaacccaggctgtttagcatgttatgcaggtgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttcctgttgtgcagtgttggacatggaacccaggctgtttagcatgttatgcaggtgata 417
Query: 61 gactatctctgatatagtcttgataaaagaaaatgggaattaaaggtttgtagtagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gactatctctgatatagtcttgataaaagaaaatgggaattaaaggtttgtagtagatga 357
Query: 121 ctgaattcactgaaacttgtgggtgtgtctagcattggagaagaatgcaacaatcagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctgaattcactgaaacttgtgggtgtgtctagcattggagaagaatgcaacaatcagtca 297
Query: 181 tagcatctcagtggtcctgggttcttaatgtgtttcaggctctattccaagctccacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tagcatctcagtggtcctgggttcttaatgtgtttcaggctctattccaagctccacatt 237
Query: 241 catgaatgcatgctcaccccaactttgtgtttgtgg 276
||||||||||||||||||||||||||||||||||||
Sbjct: 236 catgaatgcatgctcaccccaactttgtgtttgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
