Query= MSMg01no201_h07.b1 MSMg01no201_h07.b1 CHROMAT_FILE:
MSMg01no201_h07.b1 PHD_FILE: MSMg01no201_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:39 2005
(565 letters)
>mm_chr11_56136952_56137915
Length = 964
Score = 948 bits (490), Expect = 0.0
Identities = 536/557 (96%), Gaps = 10/557 (1%)
Strand = Plus / Plus
Query: 5 gaattccagaacacctccttttttaccttgttattatcattttaattcactttaaattaa 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattccagaacatttctttttttaccttgttattatcattttaattcactttaaattaa 273
Query: 65 ttttataattaggataaaatgtgatgaatttcaataaggcatttatacatattatacata 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 ttttataattaggataaaatgtgatgaatttcaataaggcat---------ttatacata 324
Query: 125 tatgcatcagtatagctccttctaattcttcctcatcccgagctgcccgcctccacccca 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgcatcattatagctccttctaattcttcctcatcccgagctgcccgcctccacccca 384
Query: 185 acatgacctctttgcttgtcaactttctcccctcaagtagccccttaatccagaaaattc 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaagacctctttgcttgtcaactttctcccctcaagtagccccttaatccagaaaattc 444
Query: 245 tttaatactttctcaactcattaattaccaatcacaacccattcttgtccactagtgttc 304
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 tttaatagtttctcaactcattaattaccagtcacaacccattcttgtccactagtgttc 504
Query: 305 ctataatagatacttaaagcaaatgaatcctactccacacacgtgacagctaatgtctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctataatagatacttaaagcaaatgaatcctactccacacacgtgacagctaatgtctgg 564
Query: 365 gtcgatcacttagcaatgacacacataaggtttgcttctctgatgtcctctaacagtact 424
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 gttgatcacttagcaatgacacacgtaaggtttgcttctctgatgtcctctaacagtact 624
Query: 425 ccagacaactctttttatggtccagttatttccattttgccagtgtacagtgtttgttta 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagacaactctttttatggtccagttatttccattttgccagtgtacagtgtttgttta 684
Query: 485 ttaatatgtaagttgattagacttttggctgtttttaatttttgtttttttggagntaat 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 685 ttaatatgtaagttgattagacttttggctgtttttaatttttgtttttt-ggagttaat 743
Query: 545 tttcttttactttttgg 561
|||||||||||||||||
Sbjct: 744 tttcttttactttttgg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_h07.g1 MSMg01no201_h07.g1 CHROMAT_FILE:
MSMg01no201_h07.g1 PHD_FILE: MSMg01no201_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:39 2005
(333 letters)
>mm_chr11_56166365_56167097
Length = 733
Score = 640 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Minus
Query: 1 ttcctgttgtgcagtgttggacatggaacccaggctgtttagcatgttatgcaggtgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttcctgttgtgcagtgttggacatggaacccaggctgtttagcatgttatgcaggtgata 406
Query: 61 gactatctctgatatagtcttgataaaagaaaatgggaattaaaggtttgtagtagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gactatctctgatatagtcttgataaaagaaaatgggaattaaaggtttgtagtagatga 346
Query: 121 ctgaattcactgaaacttgtgggtgtgtctagcattggagaagaatgcaacaatcagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctgaattcactgaaacttgtgggtgtgtctagcattggagaagaatgcaacaatcagtca 286
Query: 181 tagcatctcagtggtcctgggttcttaatgtgtttcaggctctattccaagctccacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tagcatctcagtggtcctgggttcttaatgtgtttcaggctctattccaagctccacatt 226
Query: 241 catgaatgcatgctcaccccaactttgtgtttgtggtatttgtatgtgtatgtgctcatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 catgaatgcatgctcaccccaactttgtgtttgtggtatttgtatgtgtatgtgctcatg 166
Query: 301 tgtatgtgtgttgtgggtacatgtgttgttg 331
|||||||||||||||||||||||||||||||
Sbjct: 165 tgtatgtgtgttgtgggtacatgtgttgttg 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
