BAC Information

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BAC

Clone NameMSMg01-202F14
Chromosome11 (Build37)
Map Location 56,560,900 - 56,561,151
singlet/doubletsinglet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202F14.T7 (MSMg01no202_f14.b1)MSMg01-202F14.TJ (MSMg01no202_f14.g1)
ACCAG387540AG387541
length734742
length of high quality
(start - end)
252 (483 - 734)91 (162 - 252)
definitionCHROMAT_FILE: MSMg01no202_f14.b1 PHD_FILE: MSMg01no202_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:08 2005CHROMAT_FILE: MSMg01no202_f14.g1 PHD_FILE: MSMg01no202_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACATCAGACATCACTCATCACGATTTGACTGGCCAAGAGAACAT
GTGACTAAGCCAGCATAATTGCTAAAAGGAGCCAAGATGAAAACCTGTTT
TTTGTTTACTTTATACTTGCTACATAGCGAACCATGTTGCTTATGCCACT
CAAAGTACCTTCCTGCTCCTGTTACTGCTAACCATGATTTACTGAGCACT
TACTATAATCACCTAATGATCTGTGTACTACCCATTAATCATATTGCACT
ATTTTTACATCAACTCCTTAGGATTAGTGCATTTGTTCTTCTTTTATAAA
GAAACTGATGCATACCACCCCCCGAAAGATTGCAACTATGTGGTACTCGG
AAATGTGAGCTCAAGTTATTTCTAAATCCGAATGACTAATAATTACACTG
TAGTCTCTCTTGCTCCAAACAGAAGTGGAAGAACAATGTATGGGACCATG
AAGTTCCTTATGAAGGATCAACCAGAGTCATGTGACTGTGACAGCTCCAT
ATCCTTTTTGATACATTTTTAGTGGCACAGTCAAGTATTATACAAAAATG
AACACCAACAGGCTGAGCAGGAAACCAAGGCTGTGAGTGAGCCACTGCCC
CTATGTCCTTCTGAGCCAACCACTTAATTTACGCATGTAACTGCCGACAG
ACAATTTCTCAAAGCTTTCTCTGCATGCTTCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGAACATTATCTTCTGGACAC
AATAGGCTAGCTTCACATATGACCCTATAGAAGTTGCGAAAAGCACGCAG
AAGACCTGAAAAAGCCCAAGCCAGACAGCATTTCAAGATAGGTAAAGGAA
TTGATCACATAATCCCATGTCAACCTCCAGACCTGTGGACATACTGACAA
TTGTTAGCTACTGGAAGAGGGAGATGCAAAAACTTTTTTTTCAAAATGTG
AAGGGCCCAGCTAAGTTGACTATACTCCAGTAGAACGCTGTGCATCCTAG
TATGTTTGGGTATCACAAATTGATCTTGAAGGACTATTTTTAAAACGCAA
AAGGAAACAAAGTTTAGTGGAAGGAAAAGGGAAAGTTTAGTGGAAGGAAA
AGGAAGAAAGTCTGGTAGGAAGAGTTGATGGAAAGTCATAATTTCTGAGG
AGAAAAGACACAAATGTTTTGCTGTAATAACTTTCCATTTCGAAATGAAG
CATGCTAAACTGACCTCCTAAATCCCCAAGCATAGAATTAGAGTATCTTA
GCTTTATAGAAGACACACACTTCATACAGGCTCTTACAAATTGCCCCTGA
TAGTTTAATGAATTAATTCCTTTATCGGTGTTGCTGCTAAACTGTTGTTT
TGGCTTTTTGTTTAGCTTGTCTGCATTAAAGACCGGAGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_f14.b1 MSMg01no202_f14.b1 CHROMAT_FILE:
MSMg01no202_f14.b1 PHD_FILE: MSMg01no202_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:08 2005
         (252 letters)



>mm_chr11_56560700_56561351
          Length = 652

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatgtatgggaccatgaagttccttatgaaggatcaaccagagtcatgtgactgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acaatgtatgggaccatgaagttccttatgaaggatcaaccagagtcatgtgactgtgac 393

                                                                       
Query: 61  agctccatatcctttttgatacatttttagtggcacagtcaagtattatacaaaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agctccatatcctttttgatacatttttagtggcacagtcaagtattatacaaaaatgaa 333

                                                                       
Query: 121 caccaacaggctgagcaggaaaccaaggctgtgagtgagccactgcccctatgtccttct 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cacaaacaggctgagcaggaaaccaaggctgtgagtgagccactgcccctatgtccttct 273

                                                                       
Query: 181 gagccaaccacttaatttacgcatgtaactgccgacagacaatttctcaaagctttctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gagccaaccacttaatttacgcatgtaactgccgacagacaatttctcaaagctttctct 213

                       
Query: 241 gcatgcttcttt 252
           ||||||||||||
Sbjct: 212 gcatgcttcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)