Query= MSMg01no202_k05.b1 MSMg01no202_k05.b1 CHROMAT_FILE:
MSMg01no202_k05.b1 PHD_FILE: MSMg01no202_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:31 2005
(244 letters)
>mm_chr11_53240648_53241291
Length = 644
Score = 422 bits (218), Expect = e-122
Identities = 240/252 (95%), Gaps = 8/252 (3%)
Strand = Plus / Minus
Query: 1 cacagagaaaccctgtctcaagccaaaagcaaaccaaaaaaccattctgacccaatctgc 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 331 cacagagaaaccctgtctcaagccaaaagcaaaccaaaaaaccattcagaaataatctgc 272
Query: 61 aaaaccccaaggaggtggaagtatagctatatccatcttgtctttggacacaacagctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaaccccaaggaggtggaagtatagctatatccatcttgtctttggacacaacagctca 212
Query: 121 gaaaactctttgctgggcagtggtagcacatgcctttaatcccaacacttaggaggcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaaaactctttgctgggcagtggtagcacatgcctttaatcccaacacttaggaggcaga 152
Query: 181 ggcaagaggatttctgagttcaaggccagcct--------ggtctacagagtgagttcca 232
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 151 ggcaagaggatttctgagttcaaggccagcctggtctacaggtctacagagtgagttcca 92
Query: 233 ggacagccaggg 244
||||||||||||
Sbjct: 91 ggacagccaggg 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no202_k05.g1 MSMg01no202_k05.g1 CHROMAT_FILE:
MSMg01no202_k05.g1 PHD_FILE: MSMg01no202_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:31 2005
(287 letters)
>mm_chr11_53130675_53131361
Length = 687
Score = 466 bits (241), Expect = e-136
Identities = 274/285 (96%)
Strand = Plus / Plus
Query: 1 caggccagggggagatacagagtgagacactgtctcaaataaaataacccaggaaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caggccagggggagatacagagtgagacactgtctcaaataaaataaggaaggaaggaaa 260
Query: 61 gtggttaaagcaagatgtcacaggactccagggatttctggtcccactctgacctcttaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggttaaagcaagatgtcacagtactccagggatttctggtcccactctgacctcttaa 320
Query: 121 gcccagaaagcctcatctataccctaaggcccaggatatctatccgtattccttttgcct 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagagagcctcatctataccctaaggcccaggatatctatccgtattccttttgcct 380
Query: 181 gccactgctttaaaattaattaaagtcctaattagggttcctacggcggtaagaaaacac 240
|| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct: 381 gctactgctttaaaattaattaaagtcctagttagggttcctaccgctgtaagaaaacac 440
Query: 241 catgaccaaaagtaagttggggaggaaagggtttattcagcttac 285
|||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 441 catgaccaaaagtaagttggggagaaaagagtttattcagcttac 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
