BAC Information

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BAC

Clone NameMSMg01-202L10
Chromosome11 (Build37)
Map Location 61,865,914 - 61,866,226
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneSpecc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202L10.T7 (MSMg01no202_l10.b1)MSMg01-202L10.TJ (MSMg01no202_l10.g1)
ACCAG387765AG387766
length778723
length of high quality
(start - end)
317 (106 - 422)626 (76 - 701)
definitionCHROMAT_FILE: MSMg01no202_l10.b1 PHD_FILE: MSMg01no202_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:37 2005CHROMAT_FILE: MSMg01no202_l10.g1 PHD_FILE: MSMg01no202_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGGTGTTGTGNTTTCTTGTGTTNAACTGTTAATTCTTGGGCNNNACNNN
NNNNNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAACACCTTGTTCTGAAGGCAAACAGGAGAAGATTG
GCTTCTAAGCAGCTAGGAAGATGATCTCTCAAAGCCCACCCCTACAGTGA
CACACTTCCTCCAACAAGGCCCCCTCCTAATAGTGCCATTTTCTGGGCCA
GGCATATTCAAACCACCACAATAGTCCTCCATGAAGTGTAGTCAAAAGCA
AAGGAATCCTGCATGACTCTCGGCAGGTGCTTCATATAGAGGCTTCACCC
TGTAGCTCAGTTTCTTTCTGCATGGTGGACATTTTGTAAAAGCATCCTTT
AATGTCCTGAAGTGAAATTGATGAGTCCACCCCCGCGGCTGAAAAAAAAA
TTAATGCCTTACCTGAACTATAGAAGACAAAGAATAGGAAACCAGATCCT
AATGAAGTAGCATTGTGGATGAGCAGCAGGCCCCTGGCTCCCTCAGAAGG
AGGGGAATGCCTACACACTGTGTAGACTCTGTCAGAAGAAACTGCTGCAC
ATGAGACTGACAGCACCAGCCAGCAAGCCGCACTAAGCAGTGCTGCAGGA
GGGCATTCTGAACTACCAAGAACAGGCGGGTAACTTCCTTTGAGGGGAGG
ATAGTTCCATGTTCCATTTTGAGGTGATTCAGGGTAATCATGTTCTGGCA
AGCTGCTCCTGTGTCTCTATGTAGAACC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGTCTAAATTGTGGGTTTGCTGGG
GAAAAAAAAAAGATCAATTGATGCCCAGGATCATAGGTTCAGAGGTGAAG
AGGACACATCATCTGGCCCAACACCAGGAGTAACTGGGAGCAGCGGGACC
CAGGCACCCAGGAACTCAGCCCAATCAGTGGCAAGGGTTCCTTCCTGTCT
GGGACGGTGCCCTGAGCAGACCTTGAACGTGAACTCCACAGCCAGTTCCA
CAACATCCAGAAGAAGATCCACATCCAGGCCCTCTAACATGCCCAGCACC
ACAGGATCCCAGGATCTTAACCACACCATGATCTCAGGAGCTCTGACACA
CCCAGAATCTCAAGATCACAGGATCCCAGAATCACAGGATCCCAGAGACA
GCTGAACTCTGAGGAGTTCTGACACAACCAGGACCACAGGAAGGACAGGC
TCCAGTCAGACATAGTGAGGGCAGGTAGCACTAGAGATAATCAGATGGGA
AGAGGCAAGCTGAAGAACATAAGCAACAGAAACCAAGGTTACTTGGCATC
ATCAGAACCCAATTCTCCCACCATAGCAAGTCCAGCCCTACAAAGGATAA
TAGGTGGAAAACACCAACACCAGGAGGGAAACTACACCCTAGAAAAAGCA
AGAAAGTAATCTTCTTTCAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_l10.b1 MSMg01no202_l10.b1 CHROMAT_FILE:
MSMg01no202_l10.b1 PHD_FILE: MSMg01no202_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:37 2005
         (317 letters)



>mm_chr11_61865710_61866426
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaccttgttctgaaggcaaacaggagaagattggcttctaagcagctaggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaccttgttctgaaggcaaacaggagaagattggcttctaagcagctaggaa 264

                                                                       
Query: 65  gatgatctctcaaagcccacccctacagtgacacacttcctccaacaaggccccctccta 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatggtctctcaaagcccacccctacagtgacacacttcctccaacaaggccccctccta 324

                                                                       
Query: 125 atagtgccattttctgggccaggcatattcaaaccaccacaatagtcctccatgaagtgt 184
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 325 atagtgccattttctgggccaagcatattcaaaccatcacaatagtcctccatgaagtgt 384

                                                                       
Query: 185 agtcaaaagcaaaggaatcctgcatgactctcggcaggtgcttcatatagaggcttcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcaaaagcaaaggaatcctgcatgactctcggcaggtgcttcatatagaggcttcacc 444

                                                                       
Query: 245 ctgtagctcagtttctttctgcatggtggacattttgtaaaagcatcctttaatgtcctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtagctcagtttctttctgcatggtggacattttgtaaaagcatcctttaatgtcctg 504

                        
Query: 305 aagtgaaattgat 317
           |||||||||||||
Sbjct: 505 aagtgaaattgat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)