BAC Information

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BAC

Clone NameMSMg01-204B24
Chromosome11 (Build37)
Map Location 86,107,498 - 86,217,639
singlet/doubletdoublet
Overlap geneThrap1
Upstream genePpm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2
Downstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204B24.T7 (MSMg01no204_b24.b1)MSMg01-204B24.TJ (MSMg01no204_b24.g1)
ACCAG388630AG388631
length719724
length of high quality
(start - end)		372 (45 - 416)534 (77 - 610)
definitionCHROMAT_FILE: MSMg01no204_b24.b1 PHD_FILE: MSMg01no204_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:33 2005CHROMAT_FILE: MSMg01no204_b24.g1 PHD_FILE: MSMg01no204_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,217,272 - 86,217,639)(86,107,498 - 86,108,031)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAAAGACTCAAAGGTCTTCTGTTGGTTTGGGGCCAGGAGCAGCT
CGCATGACCTCCTGCTGCCTCCCTTAGGTGCTTGTCCCTGGGGAGATGCA
ATGCCTCACCCATGAATTTCCCCCTTGGCTTCTAACTCAAAGTTGTGTGC
ACCTGCCTCTCTCCTCCAGAAGGCAAGCAGCCTGGGCCACTGCTAGAGTA
GAGATGAACTCTTGTGCATTAGGGAAAAACTGGAATCCAGCCTTTGGTGG
GAATTGGAACTCTGATGTAGGAGCTCTCAGCAAGGAGCAGTCTCTTCAGC
TACAGGAGCTCAGCACATTTCCCCTCAGAATCCATTGGAGGCTTTGCCAG
GGCAGGCCAACTGCATGCCCAAGAAAGACCTTCATCCTAGAAGCCAATGA
AGAGGCAGGAAATCGGGGAATGGAGAGACCCACTCTACGTATTCCCGGGC
AAGCAAGCAAGCTCTGAGACTCCTAACACTGGGAGGATAGTAGTCTGCTG
TGGTCTTCTGCCTAAAGAATTGAGACACCAAATTTACAAAGTACCTGATG
GATTTTGAACATTGTTGAGGCAAAGGGTAGATGGATGGTTCAGNCATTAA
AGGTGATTATGCAAATCCAATGACCTGAGTTTGATCCCTGGAACCCACTT
GAAGAAGGAAAGGAGGAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATGTAACATGGCATGTGTGTG
TGCATATCTGAACACACAGAAAGCACAATGTAAAAAAGAAAAGAGAAAAA
GAAAAGCATACATGTTACTATAGTCTTTAGAATTATTCTGACCTCACCCT
CAAACTATCATTGCTATAATTAATCTATAATTCATCTATTATATATGATC
AAATTCACATAATTTTTTCAGGGCTTGTTAATATTGTCTTATAGTAATTA
ATAATAGGAATTTTCTATCAATAAGAATTTGGATTATCTTTTACTTCTGA
TTATAATTTTAGTTATCTTAGTGGCTGAGAACAATTAAAATGTAGACTAC
CTCCATAGTTCCCAAAAATACCAAATACAAAGCCTACATAAGATCTATTA
TGCTTACATGAATGAACTCATTAAATCTTTACAATTCTAATCAAGTCAAA
TACTAGCTTTATTTCATTAGTAAAATAAAGTGAGTTGGGGATATAGTTCA
GTTATAAACTACTGGCCTAGCATACACAAGATCCTAGTGTAGAGGGATTT
TAATCCAGCAATATGGCTGGCTGCTCTGGTTGGAATACATACAAATACTT
AGTATACATTATTATAAAAGGTAAAGCTAGATTGTACACCTATATTTGAA
AGCAATGACTTATTGAGTGCGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_b24.b1 MSMg01no204_b24.b1 CHROMAT_FILE:
MSMg01no204_b24.b1 PHD_FILE: MSMg01no204_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:33 2005
         (372 letters)



>mm_chr11_86217068_86217839
          Length = 772

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaaagactcaaaggtcttctgttggtttggggccaggagcagctcgcatgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattcagcaaagactcaaaggtcttctgttggtttggggccaggagcagctcgcatgac 513

                                                                       
Query: 65  ctcctgctgcctcccttaggtgcttgtccctggggagatgcaatgcctcacccatgaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctcctgctgcctcccttaggtgcttgtccctggggagatgcaatgcctcacccatgaatt 453

                                                                       
Query: 125 tcccccttggcttctaactcaaagttgtgtgcacctgcctctctcctccagaaggcaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcccccttggcttctaactcaaagttgtgtgcacctgcctctctcctccagaaggcaagc 393

                                                                       
Query: 185 agcctgggccactgctagagtagagatgaactcttgtgcattagggaaaaactggaatcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agcctgggccactgctagagtagagatgaactcttgtgcattagggaaaaactggaatcc 333

                                                                       
Query: 245 agcctttggtgggaattggaactctgatgtaggagctctcagcaaggagcagtctcttca 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 agcctttggtgggaattggaactctgatgtaggagctcccagcaaggagcagtctcttca 273

                                                                       
Query: 305 gctacaggagctcagcacatttcccctcagaatccattggaggctttgccagggcaggcc 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gctacaggagctcagcacagttcccctcagaatccattggaggctttgccagggcaggcc 213

                   
Query: 365 aactgcat 372
           ||||||||
Sbjct: 212 aactgcat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_b24.g1 MSMg01no204_b24.g1 CHROMAT_FILE:
MSMg01no204_b24.g1 PHD_FILE: MSMg01no204_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:33 2005
         (534 letters)



>mm_chr11_86107298_86108231
          Length = 934

 Score = 1025 bits (530), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatgtaacatggcatgtgtgtgtgcatatctgaacacacagaaagcacaatgtaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatgtaacatggcatgtgtgtgtgcatatctgaacacacagaaagcacaatgtaaaaa 260

                                                                       
Query: 61  agaaaagagaaaaagaaaagcatacatgttactatagtctttagaattattctgacctca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaaagaaaaagaaaagcatacatgttactatagtctttagaattattctgacctca 320

                                                                       
Query: 121 ccctcaaactatcattgctataattaatctataattcatctattatatatgatcaaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcaaactatcattgctataattaatctataattcatctattatatatgatcaaattc 380

                                                                       
Query: 181 acataattttttcagggcttgttaatattgtcttatagtaattaataataggaattttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataattttttcagggcttgttaatattgtcttatagtaattaataataggaattttct 440

                                                                       
Query: 241 atcaataagaatttggattatcttttacttctgattataattttagttatcttagtggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaataagaatttggattatcttttacttctgattataattttagttatcttagtggct 500

                                                                       
Query: 301 gagaacaattaaaatgtagactacctccatagttcccaaaaataccaaatacaaagccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaacaattaaaatgtagactacctccatagttcccaaaaataccaaatacaaagccta 560

                                                                       
Query: 361 cataagatctattatgcttacatgaatgaactcattaaatctttacaattctaatcaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataagatctattatgcttacatgaatgaactcattaaatctttacaattctaatcaagt 620

                                                                       
Query: 421 caaatactagctttatttcattagtaaaataaagtgagttggggatatagttcagttata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatactagctttatttcattagtaaaataaagtgagttggggatatagttcagttata 680

                                                                 
Query: 481 aactactggcctagcatacacaagatcctagtgtagagggattttaatccagca 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactactggcctagcatacacaagatcctagtgtagagggattttaatccagca 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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