BAC Information

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BAC

Clone NameMSMg01-204H11
Chromosome11 (Build37)
Map Location 3,071,760 - 3,071,917
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204H11.T7 (MSMg01no204_h11.b1)MSMg01-204H11.TJ (MSMg01no204_h11.g1)
ACCAG388833AG388834
length837768
length of high quality
(start - end)
159 (118 - 276)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no204_h11.b1 PHD_FILE: MSMg01no204_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:00 2005CHROMAT_FILE: MSMg01no204_h11.g1 PHD_FILE: MSMg01no204_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGT
GTAGAACAGGCTGCCTTGAACTCACAGAGATCCATCTGCCTCTGCCTCCA
GAGTGCTATTATCCACAGGTGTGTGCCATCATCTTCCTGGTTTCATAGAT
TGTTTTCTATTGTTAGTGATGTGCATTTTCTTGGTGAAGTGTATCCTGCT
GCCTTCCTTGTCATTTATAGTTATAATGGATATGGCTGAACGTTTTGTAG
TAGAAAGGAAAGTAGGTTGATTTTTATCTACTTTCCATTACCAACTTCAA
TCCCCACCACTTTTTTTTTTTTACATAAACTACCCCAAACACACAAAAAA
AAATATTTTTTTTTTCCCCCCCCCCCCCCCCTAATTATTTTATATAATAT
TATAATATTTTTGTGTTACAAACCCAAAAAAAAAAAATAATTTNNTTTTA
CTCTTCGCCTATTTCTATCTTCTTCCCTTTCTACCTTATAAAACTTTTTA
CATTCAAATCTTCTTCTACTTCCTCTTTCCTTATTTCCATTCTCCCCTCT
CATTCCTCTTATCCTTAATTACCCTTTCTTCCCTTTCTCCTACCTATTTC
CTTATTTCCTCTTTTATCCTCTTTCTATATCTCTTTTTCGCATTTTCCCC
CTTATACTCCCTTTATTTTTCTTTTATTCTCTCTTTCACCCATCACATAT
CAACTTTTTATCCCCATTTTCTTTCTCTTTTTTTACTTTTTTTTTTCACT
ATTCTTCCCCACCATTAATTCCTCATTATTCCTAACTTATTCGTCCCTTA
CTCTTGCACTTATTTCTCTTTCCATATTTACTCTTAT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATGTCCACTGTAGGACATGG
AATATGGCAAGAAAACTGATTATCCCGGAAAATGAGAAACATCCACTTGA
CGACTTGAAAAATGACGAAATCACTAAAAAACGTGAAAAATGAGAAATGC
CCACTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATG
AGAAATACACACTTTAGGACGTGAAATATGGCGAAAAAAAACTGAAAAAG
GTGGAAAATTTAGAAATGTCCACTGTAGGACGTGGAATATGGCAAGAAAA
CTGAAAATCATGTTTTTTTACACACCCCCACCTGACGACTTGAAAAATGA
CGAAATCACTAAAATACCCCACCCTATGACAAAAACACATTTAAGGACCT
GGAATATGGCAAGAAAACTGCAAATCACGGAAAATGAGAAATACACATTT
TACGACGTGAAATATGGCGAGGAAAACTGAAAAAGTTGGAAAATTTACAA
ATGTCCCACTGCAAGAAGTGTACTATCGGCAGATTACTGAATATCACCGC
AAAACCGATAACCTCTATTTGACCACTTGTATACATTACGCTATTCCCTA
ATAAACCTCTTCACTCACGTAATATTGCTCATCTGGATTAATTATTAATT
TAACTTCAACAATACTTTCCCTATTTCCATTAAACTTGTTATTTTCTTCC
TCTCTTATCTAATTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_h11.b1 MSMg01no204_h11.b1 CHROMAT_FILE:
MSMg01no204_h11.b1 PHD_FILE: MSMg01no204_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:00 2005
         (159 letters)



>mm_chr11_3071560_3072118
          Length = 559

 Score =  277 bits (143), Expect = 3e-79
 Identities = 155/159 (97%), Gaps = 2/159 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgtgtgccatcatcttcctggtttcatagattgttttctattgttagtgatgtgcatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 358 ggtgtgtgccatcatcttcctggtttcatagattgttttctattgtaagtgatgtgcatt 299

                                                                       
Query: 61  ttcttggtgaagtgtatcctgctgccttccttgtcatttatagttataatggatatggct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttcttggtgatgtgtatcctgctgccttccttgtcatttatagttataatggatatggct 239

                                                  
Query: 121 gaacgttttgtagtagaaaggaaagt-aggttgattttt 158
           |||||||||||||||||||||||||| || |||||||||
Sbjct: 238 gaacgttttgtagtagaaaggaaagtcag-ttgattttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)