CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTATGGCCTAGCAAGGAACACTGACAAAGCAGGCTGCATGTG
TGGGAAGACAGGAAGTATTGTCCGTGTGCAGCAACTGAGTAACTATAGTA
GCTACAGGACTGTGCGTACGGGACCATCCACCTCTGTATGTCTCATCTTG
TGAGCTAGACATGATGGGACTCCCACACATTTATTTAATTTAATCCTACA
AATTATTTTCTATTACAAAAGTGGTTAATTAATATGGCACAGGAGAGTTT
CCAGGCACGGCATATTACCTAAACAACCCCACTCCTATTGACTTCACCCT
TCCTATGGCTTTCCCACATCTCTCCTGACAAGTAGCCATTGTCAGCATCA
AAGATGTTAAACACCACCCCATACGTATATATATAAAAAAATCTTGACAA
TGAGGTTGACATCCTGAGACTCAATAATATCAATTCAAAACAACAAGGAA
AGAATTATGGTTTGAGACGATGGAAGGGGCAAGAAAGGACAAAGTGATGT
GCAAGAGGCAGGATGTTCCGAGTCAAAGGGGAGAGAAGAGAGAGAGAGGG
GATGCCCAGGATACTTGGTATACAGGAAGAAAGGGGAGTGGACAGGTTGG
CTCCCTGATGGTGTTTGAAGCAGATGATAAAGAGAGAGGTAGACTAGGCA
GGTAAGTAGACAGATGGGAGGAGAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAACTTCATGTAAAAGTATT
GCTAGTTATTTACTTCTAATTAGCCAATACAGAGGACATTTTATTTATAA
CAGTGTTAAACACCTCTTATTTCCATTGCTTTTAAAGAACGGTGGCTGAA
AGATAACCTCAATGAAGTAGCCAAACAGGGTATATGGTAAGACAGTGATG
TGAAGACACCCCAGCACAGGAGTTTTCCAAGGAGGGACCTGAGGGCCAAG
TGTTCCCGAGCTGGCCCCACGCACCTGCAGTCTAATGAAGCTCTCTGAGT
GAGAGTGTTTCCAGAGTGAACTGTCGCCAGGTTTGCGGCTGGGCTGTGGT
GGTAACGCCCACACTGCCAACGTGCCTTAGGCCTTCCTTACTCCAGGCTC
CCTAAGTCCCACAGAATCAAGTCAGAGCTCTTATCATGGCAATTACGACA
CTGAAACGAACAGGCCAACTGCTTGCTCCCAGCACCCTGCACATTCGAGG
CCTCTCTATGTGTGTGCTTTCCATTCCCTCCTACTACTTCTGACTAAAGT
AGAACTGGCTGGGCTACTGCTTCTGACTAAAACACGCTTTCCCTCATCTT
TACGTCCCCCACACAATCCAACTCAATGCGTGGCCTCTCTAAGCACCTCA
CTCTCTCTACTTCAGAAGCTAGCTATAATC

Query= MSMg01no206_a08.b1 MSMg01no206_a08.b1 CHROMAT_FILE:
MSMg01no206_a08.b1 PHD_FILE: MSMg01no206_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:03 2005
         (368 letters)



>mm_chr11_63978873_63979640
          Length = 768

 Score =  644 bits (333), Expect = 0.0
 Identities = 357/365 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatctatggcctagcaaggaacactgacaaagcaggctgcatgtgtgggaaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggaattccatctatggcctagcaaggaacactgacaaagcaggctgcatgtgtgggaaga 509

                                                                       
Query: 64  caggaagtattgtccgtgtgcagcaactgagtaactatagtagctacaggactgtgcgta 123
           ||||||||| |||| |||||||||||||||||| ||| ||||||||||||| ||||| ||
Sbjct: 508 caggaagtaatgtcagtgtgcagcaactgagtagctacagtagctacaggattgtgctta 449

                                                                       
Query: 124 cgggaccatccacctctgtatgtctcatcttgtgagctagacatgatgggactcccacac 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgggaccatccacctctgtatgtctcatcttgtgagctagacatgatgggactcccacac 389

                                                                       
Query: 184 atttatttaatttaatcctacaaattattttctattacaaaagtggttaattaatatggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atttatttaatttaatcctacaaattattttctattacaaaagtggttaattaatatggc 329

                                                                       
Query: 244 acaggagagtttccaggcacggcatattacctaaacaaccccactcctattgacttcacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acaggagagtttccaggcacggcatattacctaaacaaccccactcctattgacttcacc 269

                                                                       
Query: 304 cttcctatggctttcccacatctctcctgacaagtagccattgtcagcatcaaagatgtt 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttcctatggctttcccccatctctcctgacaagtagccattgtcagcatcaaagatgtt 209

                
Query: 364 aaaca 368
           |||||
Sbjct: 208 aaaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no206_a08.g1 MSMg01no206_a08.g1 CHROMAT_FILE:
MSMg01no206_a08.g1 PHD_FILE: MSMg01no206_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:03 2005
         (339 letters)



>mm_chr11_63840572_63841310
          Length = 739

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcaacttcatgtaaaagtattgctagttatttacttctaattagccaatacagagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 ttttcaacttcatgtaaaagtattgctagttatttacttctaattagggaatacagagga 260

                                                                       
Query: 61  cattttatttataacagtgttaaacacctcttatttccattgcttttaaagaacggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttatttataacagtgttaaacacctcttatttccattgcttttaaagaacggtggc 320

                                                                       
Query: 121 tgaaagataacctcaatgaagtagccaaacagggtatatggtaagacagtgatgtgaaga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagataacctctatgaagtagccaaacagggtatatggtaagacagtgatgtgaaga 380

                                                                       
Query: 181 caccccagcacaggagttttccaaggagggacctgagggccaagtgttcccgagctggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccccagcacaggagttttccaaggagggacctgagggccaagtgttcccgagctggcc 440

                                                                       
Query: 241 ccacgcacctgcagtctaatgaagctctctgagtgagagtgtttccagagtgaactgtcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacgcacctgcagtctaatgaagctctctgagtgagagtgtttccagagtgaactgtcg 500

                                             
Query: 301 ccaggtttgcggctgggctgtggtggtaacgccc 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaggtttgcggctgggctgtggtggtaacgccc 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)