Query= MSMg01no206_c06.b1 MSMg01no206_c06.b1 CHROMAT_FILE:
MSMg01no206_c06.b1 PHD_FILE: MSMg01no206_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:13 2005
(681 letters)
>mm_chr11_69453917_69455003
Length = 1087
Score = 1129 bits (584), Expect = 0.0
Identities = 612/626 (97%), Gaps = 11/626 (1%)
Strand = Plus / Minus
Query: 4 ggaattccccaaagggctctcagtcactcacatctcccttcatcatccgcacccgggcca 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ggaattccccaaagggct-tcagtcactcacatctcccttcatcatccgcacccgggcca 911
Query: 64 gccaccagccacaaggttcctgttcattggctctcgaatagacctgaaagaggagaaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gccaccagccacaaggttcctgttcattggctctcgaatagacctgaaagaggagaaata 851
Query: 124 aagagaaatggcattgaagactacccaaaaatatcaagaattggagaaagcatccaaata 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 850 aagagaaatggcattgaagactatccaaaaatatcaagaattggagaaagcatccaaata 791
Query: 184 cccaagcattcgtaaacccacaagaggaaacaaggagataccaactcaaagtatggggtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cccaagcattcgtaaacccacaagaggaaacaaggagataccaactcaaagtatggggtc 731
Query: 244 cctgagttt--tttatttcactttttttttgctcagtgggcaagagttctccaagcccaa 301
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cctgagttttatttatttcactttttttttgctcagtgggcaagagttctccaagcccaa 671
Query: 302 cgacctgagttcaagtcccagagctcacaggtcatgaccaccactcctgagctgtggaac 361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 670 cgacctgagttcaagtcccagagctcacaggtcatgaccaccactcctaagctgtggaac 611
Query: 362 actcatgccccccaa------acacacacacacacacactacttcacactaaggaaaaaa 415
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 610 actcatgcccctcaaacacacacacacacacacacacactacttcacactaaggaaaaaa 551
Query: 416 gataaagagatggaggtcttgagctggagagatggctcagaggttaagagcactgactgc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gataaagagatggaggtcttgagctggagagatggctcagaggttaagagcactgactgc 491
Query: 476 tcttccaaaggtcctgagttcagttcccagcaaccacatggtggttcacaaccatctgta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tcttccaaaggtcctgagttcagttcccagcaaccacatggtggttcacaaccatctgta 431
Query: 536 atggga--tgatgcccttttctggtgtgtctgaagacagtgacactgtactcacatacat 593
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgggatctgatgcccttttctggtgtgtctgaagacagtgacactgtactcacatacat 371
Query: 594 aaataaatcttaaaagagagaaagag 619
||||||||||||||||||||||||||
Sbjct: 370 aaataaatcttaaaagagagaaagag 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1087
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1077
Effective search space: 722667
Effective search space used: 722667
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_c06.g1 MSMg01no206_c06.g1 CHROMAT_FILE:
MSMg01no206_c06.g1 PHD_FILE: MSMg01no206_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:13 2005
(543 letters)
>mm_chr11_69315979_69316921
Length = 943
Score = 965 bits (499), Expect = 0.0
Identities = 532/543 (97%)
Strand = Plus / Plus
Query: 1 ctgcacaagccaggtctgttagtgcctgcttttaatcccagtatgccccaggcaaaggca 60
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 201 ctgcacaagccaggtctgttagtgcctgcttttaatcccagcacgcgggaggcaaaggca 260
Query: 61 gacatattgaagcaagtttgaggcagacctgatatacactcaggttccaggccagggggt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gacatattgaagcaagtttgaggcagacctgatgtacactcaggttccaggccagggggt 320
Query: 121 ggggtgtaggtgaaatctatcatcctccaggctgagtcctgtgactgcagctgagtgatg 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ggggtgtaggtgaaatctatcatcctccaggctgagtcgtgtgactgcagctgagtgatg 380
Query: 181 ctgataaagatcacagattagtccaagcagctggcctgcctcttcaggcttcatcctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgataaagatcacagattagtccaagcagctggcctgcctcttcaggcttcatcctgtg 440
Query: 241 tccttcccagttactctcttactccttcctccagatctccagagcttgagttgtatcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttcccagttactctcttactccttcctccagatctccagagcttgagttgtatcaca 500
Query: 301 gagcgatcctaacaaaacacactgtgatatctgcttgagaacacacaaattgacccacgg 360
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 501 gagcgatcctaacaaaacacactgtgatatctgcatgagaacagacaaattgacccacgg 560
Query: 361 aataaaactgaagacctggacataactccaaacacctacagacagctgattggtttgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaaactgaagacctggacataactccaaacacctacagacagctgattggtttgttt 620
Query: 421 ttatttgtatgagacaggtttcttggtgtgaccctggctgtcctagaacttactatgtag 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ttatttgtatgagacaggtttcttggtgtaaccctggctgtcctagaacttactatgtag 680
Query: 481 accaggccggccttgaacttaaagctccacctgcctctgtctctcaagaattaaaggagc 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaggccggccttgaactcaaagctccacctgcctctgtctctcaagaattaaaggagc 740
Query: 541 att 543
|||
Sbjct: 741 att 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
