BAC Information

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BAC

Clone NameMSMg01-209D12
Chromosome11 (Build37)
Map Location 19,308,470 - 19,438,179
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665796, Meis1, LOC635455
Downstream geneLOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209D12.T7 (MSMg01no209_d12.b1)MSMg01-209D12.TJ (MSMg01no209_d12.g1)
ACCAG391828AG391829
length716721
length of high quality
(start - end)
273 (46 - 318)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no209_d12.b1 PHD_FILE: MSMg01no209_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:17 2005CHROMAT_FILE: MSMg01no209_d12.g1 PHD_FILE: MSMg01no209_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,308,470 - 19,308,738)(19,437,895 - 19,438,179)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAACAACAAGATTGAAACAGTATTTTTCAAAGGAGGATATGGG
TTGCCTACATCATTATCTCTGACGAACTTGTTAAAAATACCTTTGGGGTG
GAATAGCTCAGTAGATTTTGACCTCTGCTGGACACTCATTGCCTGTTACA
TTGAAATGTCAATAGGAGAGTATTACCACCATGACTGAAGTGTAATTTTT
CTGACATAGGATGCATACTTCCAGTTTCTCAGACCCTCTTTGATTGATTG
GGGTGTGAAACAAAGTTATTTTTTGCAAGACAAACGCTAATGTTTAGAAA
CTCAATTAANATGNCCTCTNNTTCCTTGNCCCCTTGCCTCTTCCCTCCAT
GAAGGTTGAAGGGGCCACCAAAATCACCAAAACTATCTCATAGTTAGAAG
TGACTCGATGCCCAGGGTTGGAGTAGGCTTAGAAAAGTGCCGGGTGGAAG
CCTGATCTTACCTTAAGGTCCTCGTTATCCTGCTAAAATGGGATGCATGG
ACCTAGCACAAGTCCTCTCTCTTGACCCCCTCTCTTTAAATACCAATCAG
TGTCTAGAATATCATGCTGGTCTGCCTTGGGTTAAATTCAGTGATGTCTA
CCTTGTACTTGCACAGCCTCTGAATCAACCTTATCGATCACCCACTTCTG
ATCTTAGTAAGCTACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAGAAATAAGACACAGCAA
GCCCTTGTCCTTCCTAGAGGGGAAACAGCTGGTGTAAGGGAACAAATGAC
CAAGTCAAAAATATGAGATGTGCGAGGTAGTGTTCACAGTCACGAACATC
ATCGGAAGGTGATGTATGAAGTCCGTGCAAGGATGTAGGAGGACCAAGGA
AGACCAATCTGGATTGGAGTTAATGAGCAAATTGAGGTAGAAAGTTTTGT
ATCGAAGAAAATGGCATTTGCAAGTGCTGGCTGCACTGTGGGACATCCGG
GCTGCGTGCCTGTTTTGTCTATGCCCCGCCCAAGGAGGGCCCAGGCGGTC
AGCTTCTGACACATTGTGCCCACCCTGGCAACTGAGAGTCCTTTCCCACG
CACTTTTCCTTCCTTGTCTGGCTGATCCTACTTTCCCTGTGGAGAGAGGA
AGGAGATTCTAAGCAACTTCCAGAGGGAAGGTAGCAGCAAGCACTCTCGA
CTGCATTCTAGACTGAAAGACAGCCAGAACCGAACAGCTGAGACTAGTCC
TGAACCCCTACTTCCTTTGTTTCCTCAATACGGATATGCATCTCTCTACT
GATGATTCAGTTCTGAGGTATCACGTGATAAAATTTCCAACACCCACCCC
TGCCCTCAATGGCGGCTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_d12.b1 MSMg01no209_d12.b1 CHROMAT_FILE:
MSMg01no209_d12.b1 PHD_FILE: MSMg01no209_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:17 2005
         (273 letters)



>mm_chr11_19308266_19308938
          Length = 673

 Score =  482 bits (249), Expect = e-140
 Identities = 264/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaacaacaagattgaaacagtatttttcaaaggaggatatgggttgcctaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaacaacaagattgaaacagtatttttcaaaggaggatatgggttgcctaca 264

                                                                       
Query: 65  tcattatctctgacgaacttgttaaaaatacctttggggtggaatagctcagtagatttt 124
           ||||||| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct: 265 tcattatatctgaggaacttgttaaaaatacctttggagtggactagttcagtagatttt 324

                                                                       
Query: 125 gacctctgctggacactcattgcctgttacattgaaatgtcaataggagagtattaccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacctctgctggacactcattgcctgttacattgaaatgtcaataggagagtattaccac 384

                                                                       
Query: 185 catgactgaagtgtaatttttctgacataggatgcatacttccagtttctcagaccctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgactgaagtgtaatttttctgacataggatgcatacttccagtttctcagaccctct 444

                                        
Query: 245 ttgattgattggggtgtgaaacaaagtta 273
           |||||||||||||||||||||||||||||
Sbjct: 445 ttgattgattggggtgtgaaacaaagtta 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no209_d12.g1 MSMg01no209_d12.g1 CHROMAT_FILE:
MSMg01no209_d12.g1 PHD_FILE: MSMg01no209_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:17 2005
         (285 letters)



>mm_chr11_19437695_19438379
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagagaaataagacacagcaagcccttgtccttcctagaggggaaacagctggtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtgagagaaataagacacagcaagcccttgtccttcctagaggggaaacagctggtgta 426

                                                                       
Query: 61  agggaacaaatgaccaagtcaaaaatatgagatgtgcgaggtagtgttcacagtcacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agggaacaaatgaccaagtcaaaaatatgagatgtgcgaggtagtgttcacagtcacgaa 366

                                                                       
Query: 121 catcatcggaaggtgatgtatgaagtccgtgcaaggatgtaggaggaccaaggaagacca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catcatcggaagttgatgtatgaagtccgtgcaaggatgtaggaggaccaaggaagacca 306

                                                                       
Query: 181 atctggattggagttaatgagcaaattgaggtagaaagttttgtatcgaagaaaatggca 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 305 atctggattggagttaatgagcaaattgaggtagaaagttttgtgtcgaagaaaatggca 246

                                                        
Query: 241 tttgcaagtgctggctgcactgtgggacatccgggctgcgtgcct 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttgcaagtgctggctgcactgtgggacatccgggctgcgtgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)