BAC Information

Click to search

BAC

Clone NameMSMg01-209N17
Chromosome11 (Build37)
Map Location 113,809,926 - 113,810,042
singlet/doubletsinglet
Overlap geneSdk2
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4
Downstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209N17.T7 (MSMg01no209_n17.b1)MSMg01-209N17.TJ (MSMg01no209_n17.g1)
ACCAG392217AG392218
length756743
length of high quality
(start - end)
117 (127 - 243)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no209_n17.b1 PHD_FILE: MSMg01no209_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:08 2005CHROMAT_FILE: MSMg01no209_n17.g1 PHD_FILE: MSMg01no209_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATCATTTGCCAGGAGAGGGGTGGGGAGGAGCAATTATTTAGC
ATACGGCTTTGGAACAGCCAGAGAGCCATGTGGGAATAAAATATAAAATT
GAATATCCTTCCTCACACTTTACCTCAAAATAAATGCTGGAGAGATTGAT
GTTTTAAACATGAAAATGAAATTCTAAAAGAACTAGGCAGGGGGTGGAGT
GGGGTGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGTTTGTCTTTTTCTCCTCCGCGATTCTTGCCCTTCTTCC
CCTCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCCTAGCGGGCACAAAGCCCTAAG
TTGGATTCCCCAGCACCACATAACCCAATATGCTGGCACCTAGGCCTTAT
CCCCAGCACTCACGAGGCAGATGCAGAAGGACCAGAAACTCAGTCATCCT
GGGCTACTTACAGAATTCAAGGCTAGCCCAGGCCACATGAGACCAGTCTC
AAATAAAAAAAAAATTATGTTTCCTTTAATATTCGTACCCAAGAGGCAGA
GGCAGGCAGATCTCTATGAGTTCAAGAGGGGTAGCTGGGGGGAGGGGAGG
ACACAGAGTTGATTTGTTTCTTGCCCACCCACAAGACAGATGTGGGTTCA
TCTCTATGGCCTGGTCTACATACCAGTTTCAAGCTAGACAAGGTTACATA
GGGAGACCCTGTCTCCAATTTTGTTTTTCTTTATAAAACAAGGAAGGAAA
GGGAAAGGGAGGGGGGAGAGAAAGGAGACACTTTGATGAAGAAGAAAAAA
AAAAAAAACAGCTGGAGCCATTGATACCCCATCTACTTTCTGTGCCCTAG
AAATAAAGGTGATAGCCAGAGAGGTTCAAAACTCACACCTCCAGGCTCAG
CACCCTGCCTGTGTTGTGGTGACACTGGGGTAGAAGTGCCACCCCAGCGA
GGCTCTTTAGAGTCTCTGCTAAAAGAACAGACCAGCTGTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_n17.b1 MSMg01no209_n17.b1 CHROMAT_FILE:
MSMg01no209_n17.b1 PHD_FILE: MSMg01no209_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:08 2005
         (117 letters)



>mm_chr11_113809726_113810242
          Length = 517

 Score =  226 bits (117), Expect = 3e-64
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgggaataaaatataaaattgaatatccttcctcacactttacctcaaaataaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgggaataaaatataaaattgaatatccttcctcacactttacctcaaaataaatg 260

                                                                    
Query: 61  ctggagagattgatgttttaaacatgaaaatgaaattctaaaagaactaggcagggg 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggagagattgatgttttaaacatgaaaatgaaattctaaaagaactaggcagggg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)