BAC Information

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BAC

Clone NameMSMg01-210G21
Chromosome11 (Build37)
Map Location 38,919,213 - 38,919,475
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210G21.T7 (MSMg01no210_g21.b1)MSMg01-210G21.TJ (MSMg01no210_g21.g1)
ACCAG392552AG392553
length752747
length of high quality
(start - end)
633 (46 - 678)263 (438 - 700)
definitionCHROMAT_FILE: MSMg01no210_g21.b1 PHD_FILE: MSMg01no210_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:58 2005CHROMAT_FILE: MSMg01no210_g21.g1 PHD_FILE: MSMg01no210_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAGATTTTATCCTCAGTATTCTGCACTTTGTTTATGGCTAATA
TCCAATTATTAGTGAGTACATACCGTGCATGTCCTTTCTGGTCTGAGTTA
TCTCACTCAGGATGACATTTTCTAGTTTTGTCCACTTGCCTGCAAAATTC
ATGATGTCCTTGTTCTTAATAGCTGAGTAGTATTGCATTGTGTATATGAA
CCACATTTTCTATATGCATTCTTTTGTTGTGGAACATCTGGGTTGATTCC
ATCTTCTGGCTATCACAAATAAGGCCCTGCCTATGGGATGGATCTCAAGT
TGGGTGGTAACTGGATGTTCTTTCCTTCAGTTGTTTGGTCTCTGTTCCAT
TTTTGTCCCTGCATTTCTTTTACGCAGGAAAAATTCTACGTTAAAAAAAA
AATTGAAGTTAGGTGGGTGGAACCATCCCTCTACTGGGTGCCCTGTCTAT
CTATAGGAAGTGGTCTCTTCAGGGCCTATCTCTCCACTGTTGGGCATTTC
GACTAAGGTCATATGCCATTGAGTCCTGGAAGCCTCTCAAATCCCAGGTC
TCTGGGACTTTTAAAGGGTCCCTCACCCCCTACCCTCTGTAGCTGCATAT
TTCCATTCACCCTCCTGGCCCTCTGGGCTTCTCTTTTGTCTAAGCACATA
TGTGATCCTGAAACCCTTTTTCTCTCCCCTCTCCCACACCCCCCCCAAGA
TT
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCACATCTTTCTTTATTTCAG
ATAACTTTTGAAGATCTATTATCTTTCTATCGGTATATTTAAAGACGTGA
TAATTGTTCAACCTAACACTAAAATGAAAGTGATAACATTCCCTAATATC
TAACATTATATCAATTAATAAAATTATATGTTGAAATTCTTGGTCAATTT
GTATCATTATACAAATTCCCAGAACAATATATGAAGATGAAGATAAAAAA
TATTTTACATCTCTTCTTATTTGAGGTTATTAATTTATGTAACTAGGATT
TTTATGCCCTCAATTTGTTCTTTTCCACCCCCCCTTTTGGCCAACTTTAT
ACAGATGAATCATAATTATTTACCCTTATTATAAAGGTGGCCATGACAAT
AATTATAGTATTAATGTGACAACAGTTATGATTAGCAACATAATGAGGGC
AAATAATTTTTAATTACAGTAGTGGCATCGCTCTCTTTTCTTGTTGGTTG
CTCATGCTTGCATGATTAGAACAGTATTCAACATTGTTTTTGTGAAGCTA
CACTCAGTTAAAATTAGATAACATAATGTATGAATCCATTAGCTGTGGAG
ACTGAAATTATAAAATATAAACTTGAACTTGAAGCTAAAACTCGTTAGGG
GTATATTGTTATTTTCTCTTTTGAGAATCTCTGTGCTTACTCAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_g21.g1 MSMg01no210_g21.g1 CHROMAT_FILE:
MSMg01no210_g21.g1 PHD_FILE: MSMg01no210_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:58 2005
         (263 letters)



>mm_chr11_38919013_38919675
          Length = 663

 Score =  501 bits (259), Expect = e-146
 Identities = 262/263 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggccatgacaataattatagtattaatgtgacaacagttatgattagcaacataatgag 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggccatgacaataattatagcattaatgtgacaacagttatgattagcaacataatgag 260

                                                                       
Query: 61  ggcaaataatttttaattacagtagtggcatcgctctcttttcttgttggttgctcatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaataatttttaattacagtagtggcatcgctctcttttcttgttggttgctcatgc 320

                                                                       
Query: 121 ttgcatgattagaacagtattcaacattgtttttgtgaagctacactcagttaaaattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcatgattagaacagtattcaacattgtttttgtgaagctacactcagttaaaattag 380

                                                                       
Query: 181 ataacataatgtatgaatccattagctgtggagactgaaattataaaatataaacttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacataatgtatgaatccattagctgtggagactgaaattataaaatataaacttgaa 440

                                  
Query: 241 cttgaagctaaaactcgttaggg 263
           |||||||||||||||||||||||
Sbjct: 441 cttgaagctaaaactcgttaggg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)