BAC Information

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BAC

Clone NameMSMg01-211H14
Chromosome11 (Build37)
Map Location 46,584,086 - 46,584,371
singlet/doubletsinglet
Overlap geneHavcr1
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678
Downstream geneTimd4, Sgcd, LOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211H14.T7 (MSMg01no211_h14.b1)MSMg01-211H14.TJ (MSMg01no211_h14.g1)
ACCAG393179AG393180
length722797
length of high quality
(start - end)
319 (9 - 327)152 (127 - 278)
definitionCHROMAT_FILE: MSMg01no211_h14.b1 PHD_FILE: MSMg01no211_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:39 2005CHROMAT_FILE: MSMg01no211_h14.g1 PHD_FILE: MSMg01no211_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTGGGAGAGGATCCGCGGAATTCAAACATTCTTTGTAAGCATCAGT
CTCGTCATTATATATATATATATATATATATATATATATATATATATATT
AATATATTTATCTACAGGCTTTGGAATAGGTCTCACTATGTCCCAAGTTC
CCTATTGGTCAAAGCTGGCCTTAAACCTCTGATCTTGTATTAACTTCCTG
AGTCCTATGAATAAAGAATATACCATTATATCTGACTCTTTCTTTTCTTC
TTTTTTATTCAAATATATGTGAACACATTTTACAGACAAAATATAATCTT
TAAATACAAATTGATTCCTGAAAGATATACTTATTTTTTTTGCCCCCCCC
CCCTCCCCAGGAATAAACTTACAGTGTGATTACTCCAGGTATCTCCTGAG
GATAGTCACAGTGCCATTCCAGTCTGCTCAACTCATAAGGAATATCAACT
ACAAATATATATATATGGCGTTTTTCTTTTTACTACATCTGTATATAACA
TCCACAATGCCAGCGCGTTTTACACATTGTGACGATCCACATTTACCCTG
TTTTTAACCTTTTTGAGCCTCTTCTTTTGTATTCTCATATATTCAAACTA
CTTTCGATATTTACCTCTGTCCTACGATTTATTTCGCCTTCTCCGCTCCC
GTCCCCTTTATCCTCCGCTTTACCCCATCTTTTTTTCCCCTGCCCCACCT
CCCCCCTTTTCCTTTTCACTTC
CCCCTCCTTCTCTCTTTCCTTTCACATAATCCTTCTTTTCTCNNNNNTTC
TCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACTCACCATCCAGCCATTCTGA
ACAGACAGGAGGATCCAGTATCGTCTCAAATGGATCCCAGAGTCTGGATC
AGTAGCCATGTCTGACCTGTCCTATGTGTTCAAAGAGAAGGTTCCCTAAC
GACACTTACATTCAGAAGTGACAGACCAGGTGACTAACTTGTTTCCTTTT
GGGGTAGACATGTCAGACTCCTGGGAAAGCATTATCAAACACATGATCAA
AGGGAGCCCTGGGGACCTGAAATATCTCAGATTACACACCCCCTAGTGAC
CTAGTCCGTTTATTCTGAGTTTCCCCANTCAAACCCCGTTATTGATTATT
AAAAAGATTATCCGACTGCCCCCCCACAAAAAAAAAAAAGACCCCAGGCA
ATTCTGAGACTGAAGGCAAATCCTTATTTTTCAACCCACTTTTTAATACC
ATATCCATTACTTGCTATTATTTTGGGCATGCTCTCTTTTATGGACCAGG
CCCCCCGCGTAATCTTGTGACGACTCCTGATACCTGTTTTTCAATAAAGG
CTTATCGCCGGTCAGTGTTGGTAACCGTCTTTAATCCTATTACTTGTTTA
TACCAATTCACCCTTACTTCCGTCTCTCAGCCCCTTCTGTTCCAATTTTT
CGCCTCCCTATCCATTTTTTTTTTCATCCCTCACATTTCCTGCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_h14.b1 MSMg01no211_h14.b1 CHROMAT_FILE:
MSMg01no211_h14.b1 PHD_FILE: MSMg01no211_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:39 2005
         (319 letters)



>mm_chr11_46583783_46584499
          Length = 717

 Score =  503 bits (260), Expect = e-147
 Identities = 286/306 (93%), Gaps = 20/306 (6%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcaaacattctttgtaagcatcagtctcgtcattatatatatatatatatatatat 73
           |||||||||||||||||||||||||||||||||||||                  |||||
Sbjct: 589 gaattcaaacattctttgtaagcatcagtctcgtcat------------------tatat 548

                                                                       
Query: 74  atatatatatatatatattaatatatttatctacaggctttggaataggtctcactatgt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atatatatatatatatattaatatatttatctacaggctttggaataggtctcactatgt 488

                                                                       
Query: 134 cccaagttccctattggtcaaagctggccttaaacctctgatcttgtattaacttcctga 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cccaagttccctattggtcaaagctggccttaaacctctgatcttgtattaacttcctga 428

                                                                       
Query: 194 gtcctatgaataaagaatataccattatatctgactctttcttttcttcttttttattca 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtcctatgaataaagaatataccattatatctgactctttcttttcttcttttttattca 368

                                                                       
Query: 254 aatatatgtgaacacattttacagacaaaatataatctttaaatacaaattgattcctga 313
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 367 aatatatgtgaacacattttacagacaaaa-a-aatctttaaatacaaattgattcctga 310

                 
Query: 314 aagata 319
           ||||||
Sbjct: 309 aagata 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 717
Length adjustment: 9
Effective length of query: 310
Effective length of database: 708
Effective search space:   219480
Effective search space used:   219480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)