BAC Information

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BAC

Clone NameMSMg01-211L13
Chromosome11 (Build37)
Map Location 68,555,528 - 68,555,807
singlet/doubletsinglet
Overlap geneMyh10
Upstream geneGlp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211L13.T7 (MSMg01no211_l13.b1)MSMg01-211L13.TJ (MSMg01no211_l13.g1)
ACCAG393340AG393341
length723806
length of high quality
(start - end)
65 (36 - 100)283 (130 - 412)
definitionCHROMAT_FILE: MSMg01no211_l13.b1 PHD_FILE: MSMg01no211_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:07 2005CHROMAT_FILE: MSMg01no211_l13.g1 PHD_FILE: MSMg01no211_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAC
CACCTTCTCCAGGTACTTGTTCTCCAGGTACACTCTAACGCCTCCCAGAG
ACACTAGGGACACCCCCAACTAAGGCACACTTGCATCCAACTGGTTGGAA
GGAGTGGCTGAGGACTCAAGTGAGGTTCCCCTGGTCCTTCCCCACCCCTT
ACAATGAGGGAGCACCAACAGTCAGCCAGCCCAGCTGTGATGGATCCTCT
GTGGCTGGGCCCTAGAGATGACAGCAGCTTGGCTCATAGGATGGTCCTCT
TCATCAGTACTTATAGGAATGACTTGAGCTGGTAAGATGGCTCCGTATGT
GTTATTTCTTACCGCCCCCGCCCACAGCCTGAGTTAGACTCCCTGGGACG
TACTCGCATGCTACAAAAAAAAGAGAATTGACTCCCCCCGAGTTTTCCTC
TGATCTCTGGCGTGTGCACTGAAGCATGCTCATCGGTACACACGTGCATA
CACAAAAATAAATAACATTGCACACCTATTAAATGCCTCACTCACACTCG
CTGGCCCCCCACCGCCCCACGATCTGTAGTATACACAGCCTGAGCCAGCT
GCTATTTGTTGCCACCCCAGCTCACTGATTGTTCTCTCCTGTACCCACCC
CTATTTTTATGGCCCCTTATTTCTATGCACAATTTGTCCCTATCCTTTTA
CGCCCGCGCCCTGATATTCACCN
TTTTTCCCCCCTTTTTTCTTTCTCCTTTTTTTTTGTTTCATTAANNNNCT
CTCTCAATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAGGAGATGAGACAGAC
ACTGGAGGGAGAAACCTGAGGAGAAGGGCCAGCCATCTTCATATGCCAGG
TACCTTCTCCAAGACAACTAAGAACTAGCAGATGATAAGACCAGAAAGCA
TCTAGGCAGATGGAGAGACACATGCAATAGCACCAAGCAGAAAAAAGCTT
GGTATGTTCCCAGACCTGCTGACTGAAGATGGGGGGAGGAGGTTGAAAAA
TTTTTCATATGGGTCACATATCAGATTTCCTGCATATCAGATATTTACAT
TACAGTTCATAACTTTTTGTATTTTCTCCCCTTGCGAACCCAGTTATGAT
AATACTTTTATGGTTGGGAGCCACTACAACCTGAAAAAAAGTATAAAAGG
GGCATAGCGTTAGGAAGGCTGAGACCCACTGTTCTAGAAGAACATCCTGT
GCTCCCACCTGTTGAGCCCCCCCCCGCCCCCCTACAGTATTATCCCTCAA
TAGCCTTAATTTTTGCCCATTTTTTTTGCTGCCCACCCTATTCTAATTAG
TGTCCCCCTGCCCAACCTCCTGTTTTTGTTGGCTGCCCTTTGGCAACCCC
CCCCCTCCCTTGCTCTTTTATAAACACCCCCTCCCCCCCCCCCCTGATGC
TTTATCCCGTTTTTTGTAAAAAATTTATTGACCTGTTTTTCTTGCCTATT
ACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_l13.g1 MSMg01no211_l13.g1 CHROMAT_FILE:
MSMg01no211_l13.g1 PHD_FILE: MSMg01no211_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:07 2005
         (283 letters)



>mm_chr11_68555403_68556082
          Length = 680

 Score =  485 bits (251), Expect = e-142
 Identities = 274/283 (96%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaaggagatgagacagacactggagggagaaacctgaggagaagggccagccatctt 60
           |||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 405 tctgaaagagatgagacagacactggagggagaaacct---gagaagggccagccatctt 349

                                                                       
Query: 61  catatgccaggtaccttctccaagacaactaagaactagcagatgataagaccagaaagc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 348 catatgccaggtaccttctccaagacaactaagaactagcagatgagaagaccagaaagc 289

                                                                       
Query: 121 atctaggcagatggagagacacatgcaatagcaccaagcagaaaaaagcttggtatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atctaggcagatggagagacacatgcaatagcaccaagcagaaaaaagcttggtatgttc 229

                                                                       
Query: 181 ccagacctgctgactgaagatggggggaggaggttgaaaaatttttcatatgggtcacat 240
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 228 ccagacctgctgactgaagatggagggaggaggttgaaaattttttcatatgggtcacat 169

                                                      
Query: 241 atcagatttcctgcatatcagatatttacattacagttcataa 283
           ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 168 atcagatctcctgcatatcagatatttatattacagttcataa 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 680
Length adjustment: 9
Effective length of query: 274
Effective length of database: 671
Effective search space:   183854
Effective search space used:   183854
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)