BAC Information

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BAC

Clone NameMSMg01-211M02
Chromosome11 (Build37)
Map Location 32,027,311 - 32,027,555
singlet/doubletsinglet
Overlap geneLOC669207
Upstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
Downstream geneIl9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211M02.T7 (MSMg01no211_m02.b1)MSMg01-211M02.TJ (MSMg01no211_m02.g1)
ACCAG393358AG393359
length1,3321,240
length of high quality
(start - end)
409 (43 - 451)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no211_m02.b1 PHD_FILE: MSMg01no211_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:09 2005CHROMAT_FILE: MSMg01no211_m02.g1 PHD_FILE: MSMg01no211_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGATCTTTTATAATTTACAGCTGTAAGATTAAATAAATGCTTCCCC
CACCCCAAGTCACTTCTGGTCATGAGGTTTTTATCACAGCAATAGAACCC
TAACCAGGACAACTGTCTAAAACATACCCAGTAGCAGGCAGGAGAAGTCC
CCTTGTGAGCTGCTGGTCAAGGGAATCTGAGAGACTCCAAAAACAACATG
TGCTCTTGTTTTTCTGTCTCCCAAAGAGTTAAGGGAAGTCCTTAGTGATG
GAGACACCTTGCCCTTTGGACTTGGGATTCACTCATGCTGGATCTGACCT
GAAGGCTTACTCACTGACGACTGGCCTTCATTGTACAGGAAGGTGCTATG
TTTAGTGCCGAGGGAGGCATGCAACCAATGGTTCTACAAAGCTCTCCCTG
TTTTTTTTTCCCCCCCCGACCAGCATGCCGCCCCCTCCCTAAAAAAGGGA
GGGTAGGGGTACTCATTCTTGGCAGTAACCAACAGCTGCCTAATTGGATG
TAAGCCTGCTCAATGATGCCGGGGGGGGGGGAGGGGTAGACACTCCTCCA
TTACTATATTACCGCTGCCATACAAACTCCAACCCTCCTGTACCCCTTAT
TTCCTATACACCTCCCATCGCCTCCTTGGCTTCCCTTGCCGCGTATTTTC
ACTTCTACTCCTGATTGCACTCTGTCCTCGCCTCTCCGCTCTTACTCTCA
CCTTCCCTCCTCAATCCCTTGGTGTCTCGCAATGCTCCCCATCTTAAACC
CTCCTTTATACTTCTCATTTCCTCACCTTTTCTGTATCATTCCCCTACCC
TCCTTTCCTTTACCCTTCACCATTCGCTCTCCTCCGCATTTCTACGCCGA
CGTTCTTCGCGCCCTCTCCCTGTATTCTCTCCCTCCCCACTCGCACCTCC
TCTTTGCCTTCCTTATCCCCTATGTCACTACCCTCCTCCCTCTCTCCCCT
TACCTTACATTCTCCACTCCACCTTCTTCATAACTCTTTCTCTTCGTACT
CTTCTCAATCTTCCACTTTTACCCTTCTTCCCTCTTTATTCCCCTCTCCA
TCATTCTCTCTATCTCTCCATCTATTCTCTCTACTCTCCCTTTCTCCTCC
TTCCATTCTCTCTCTCGATATTCTTCATCCCTTCTTTTCTTAACTTCACT
CCCTCTCTCATTCTCTCCTCTACCTCTCAACTCTTCCCTCTTTCCGTACA
CTCTCACCCTACTTCTTCTCTGCCTCACTCTTCCTTTTCTTCCTCTCTTC
GCACACTCCTCAGCTCTCACCTTCGCTTCTTC
NNTTTCTTATGCGTAGCTGGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCCTTCTTGGTGGACAGGACAGGGACAC
CTTTATGAACAAACATGTCTTGCTTTGGGTAGAGAGTTTTTCTGTTTCTC
CATCTTCTGTCTTTGATTCAACTGTCCTTGCCAACGGGGAGAAGCAGTTA
AGCTCTGGTGGGCACAGAGCCCAGGGAGGAGACAGGGACACGTGTGCTCT
GTATCTGCTGTGGTCTCCCCCTCCTCCTCTGAAGGCCTAGGTTTAATGTG
GAGTCATTAATGAGAAAAAGAATTAACTGAATTTATCTGTGAAAGTGTTA
AAAGGCTCACGCTCCGCCTGAGGAATGAGCTGCTCAAGAAGCCTGTTTTT
TAAATTGCCTGTGTAATTGTAATCTTTTAAATGCAATTCCTGCAGATTTT
TTTTTCCCCCCCCCCNNNTNTGCTTCCCCCCCTCCAAAAAAGAGGGGGGG
NTCNTCCNNNTTATCTGTCNAACCAGCCACCGAGGCTCTGCTCACAAACA
TGTAAATGCAGATCAGGTACTTACGCAGGTGAGACTGGTTTGTACTGTTT
ATTTGCCGTTTCTGGTTCCCATCCATTTTTTTTATATATATTGGCTCATA
AATAATGCTCTTGTTCTTTAAATTTTTGCATTAACATGAACGACTCTTAG
CACAATTTCTCTTTCTCCCTCCCCCCCTCCCTTATTTCTCATTATTTCTT
CCCTCTCCCCTATTCTTCTTTTTCTCTTTCTCCCCTTTTTCTTTCCTTCC
CCTTTCTCCCATTTCTCCCTTCCTTCTCCTCTTCTTCTCTTCCACCCTCT
TCTCCCATTCCCATTCCTCCCTAACCCCTATTCCCTTCGGTCTGGAATTT
GGCCCTACGCCCCTTCTAAGTCGCCACCCGAACTTCTTTCACGGCCCCTC
CCTACCTGAATCTCTTCAATCTCCCTTCAAAACCTTGGTACCTCCCCTTT
ATTTTCTTCCCTCCCCTGAACTTCTACCCCTGCCCACTCTCGGTACCCCT
TCTCTCTCTAAATACTTCCCTCTCTCCCCTTCTTGTTTTTCATTTCCCAT
CTTCTTGGCTCCTCCCCATCTCCTCTCTCGGCCTTCTTTCTATATTTTTA
TAAACTACCTTCTCTCGTTTCTCCCACCTTTCCAACTCTTTACCCTCTCA
ACTTACCCCCGTCTCCTTCTTATCAATTCCCCTTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_m02.g1 MSMg01no211_m02.g1 CHROMAT_FILE:
MSMg01no211_m02.g1 PHD_FILE: MSMg01no211_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:10 2005
         (245 letters)



>mm_chr11_32027111_32027755
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccttcttggtggacaggacagggacacctttatgaacaaacatgtcttgctttgggt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcccttcttggtggacaggagagggacacctttatgaacaaacatgtcttgctttgggt 260

                                                                       
Query: 61  agagagtttttctgtttctccatcttctgtctttgattcaactgtccttgccaacgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagtttttctgtttctccatcttctgtctttgattcaactgtccttgccaacgggga 320

                                                                       
Query: 121 gaagcagttaagctctggtgggcacagagcccagggaggagacagggacacgtgtgctct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcagctaagctctggtgggcacagagcccagggaggagacagggacacgtgtgctct 380

                                                                       
Query: 181 gtatctgctgtggtctccccctcctcctctgaaggcctaggtttaatgtggagtcattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatctgctgtggtctccccctcctcctctgaaggcctaggtttaatgtggagtcattaa 440

                
Query: 241 tgaga 245
           |||||
Sbjct: 441 tgaga 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)