BAC Information

Click to search

BAC

Clone NameMSMg01-211O02
Chromosome11 (Build37)
Map Location 32,027,311 - 32,027,552
singlet/doubletsinglet
Overlap geneLOC669207
Upstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
Downstream geneIl9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211O02.T7 (MSMg01no211_o02.b1)MSMg01-211O02.TJ (MSMg01no211_o02.g1)
ACCAG393441AG393442
length1,2471,276
length of high quality
(start - end)
401 (43 - 443)242 (68 - 309)
definitionCHROMAT_FILE: MSMg01no211_o02.b1 PHD_FILE: MSMg01no211_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:24 2005CHROMAT_FILE: MSMg01no211_o02.g1 PHD_FILE: MSMg01no211_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTCTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGATCTTTTATAATTTACAGCTGTAAGATTAAATAAATGCTTCCCC
CACCCCAAGTCACTTCTGGTCATGAGGTTTTTATCACAGCAATAGAACCC
TAACCAGGACAACTGTCTAAAACATACCCAGTAGCAGGCAGGAGAAGTCC
CCTTGTGAGCTGCTGGTCAAGGGAATCTGAGAGACTCCAAAAACAACATG
TGCTCTTGTTTTTCTGTCTCCCAAAGAGTTAAGGGAAGTCCTTAGTGATG
GAGACACCTTGCCCTTTGGACTTGGGATTCACTCATGCTGGATCTGACCT
GAAGGCTTACTCACTGACGACTGGCCTTCATTGTACAGGAAGGTGCTATG
TTTAGTGCCGAGGGAGGCATGCCACCAATGGTTCTACAAAGGTCTCCCTG
TTTTTTTCCCCCCCCCCCANNAGNATGGCTCCCTCTCCCAGAAAAAGGGG
GGGTAGGGGCACTCATTCTTGGCAGTAACCAACACCTGCCTAATTGGATG
TAAGCCTGCTCAATGATGGCGGTGGGGCGGGAGGCGGAGAGTCCACTCTG
TCAGTGTTTTTCCCATGTCATAGCACCTTGTCACGCATGTGCCATAGTAG
GACATGATCTCACAGCTCCTTCCTACTTCTCCTACCGGACAGTTTGCCTC
ATGTCCCGAAAGAACTGAACGCCCGACTAATGGACGGTCAGGGCATGTTC
TTTAGCCTGAGAGGTACCCCATGTTGCAGTTAAAAAAAATCAGTTTTTTT
TTTTTGCCCAGAATATGACAGACCTTTAATCATCCAGAAGAATCCTACTT
GGCTTCTCTGAAATCTCTTTTAAGGTAGCATTGGTAGGGCCCAGTGCCCC
CTTTCCTACAACAAAAGTGTTTAGGTGCTATGACCATCCCTTTATTTCCA
AAAATATCGGAGTCTCGCCCTACCAGTTGCTTTATTTTCCAGAACCCCCC
GGAATATTGAAACCCCTTAAAAAACCTTACTTCGGGCCCATGGACCTTTC
TTTGTCCTCTTCCCTCCTTTTCTCCCTAACATATAAGTTTTCTCAAAAAA
CGTCGACCTCTCTGGTTGCTCCTGGACACATTCCCAGTTACTTCCTTCCT
TCTCCGCCTTCTTCTTCCTTCCATGCGACAATCCCCTCTTGCTGTCTTCT
CCTCTATCTCTCTTCCTGTCCCTCTATCCACTACATCCTACCTCGTC
NGGGTTTATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCCCTTCTTGGTGGACAGGAGAGGGACACCTT
TATGAACAAACATGTCTTGCTTTGGGCAGAGAGTTTTTCTGTTTCTCCAT
CTTCTGTCTTTGATTCAACTGTCCTTGCCAACGGGGAGAAGCAGCTAAGC
TCTGGTGGGCACAGAGCCCAGGGAGGAGACAGGGACACGTGTGCTCTGTA
TCTGCTGTGGCCTCCCCCTCCTCCTCTGAAGGCCTAGGTTTAATGTGGAG
TCATTAATGAGAAGAAGAATTAACTGAATTTATCTGTGAAAGTGTTAAAA
GGCTCACGCTCCGCCTGAGGAATGAGCTGCACAAGAAGCTTGTTTTTTAA
TTTGCCTGTGCAATTGCAATCTTTTAAATGGAATAATTGTTTTTTTTTTT
TTTCCCCCCCCCCCNNNNNNCCTCCCCCCCCCCCCAAAAAAAAGAGGGGT
GGTNTTNNTGGTTATNTTGTCAAACCATTCCTCGAGGCTCTGCTCACAAA
CATGTAAATGCCCATCCGGCACCTTCCCCCGTGACACTGGCTTGTCCTGT
TTATTTGCTCTCTCTGCCCCCTCATTTTTTCTACATATATTGCCCCCTTA
CTTAACGTTCCTGCTCCTCCCATTTTTCGCATTTCCATGCACCTACTCTT
TTCACAATTTCCCTCTTTCCCCCCTCCCCCTCCCCCTCATTTTCCCCTTA
TTTCCCCCCCTTCCCCCCACCTCCCTCTTTTCCTCCTTTCTCCCCCTTCT
TTCTTTTCCTTCCTTCTTTTCCTTCCATTTCCCCCCTTCCTTCCTCCCTT
CTCTCTCTCTCCATTCCTTCCTTCCCCTTCCCCTTTCTCCTCCCTTTCTC
TCCCCTCCCCCTTGCCCCTGCTTCTTCTGATCCCCATCTCTCTCCTCCCT
CTTTCCTGTTACCTATAACTCTCCTTCACTGTCTTCTCCTCCCCTTATAC
CTCCTCATACTTCTCTTCTACAATCCTCTTCTCCTCCCTTTTTTTTCCTC
TTTCTTCTCATTCGCTCATCCTCTTCTCCCCCATTTCTCTTTTATGTCTC
TTTCTCCTCTCCCTACTCTTTTTCCTTATCTCCCCTTTTCTACTCTTCTT
TTCCCTCCACGTTCGCTCTCTCCTTGAACTCTCTTCTCCTCTCCTCTCTT
TCTCTCTCTCCCTCTATTCTAATTCTTCTCCTCCCTCTCCCTCTTACGTT
CCTCTTTTTCCTACTCCTCTTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_o02.g1 MSMg01no211_o02.g1 CHROMAT_FILE:
MSMg01no211_o02.g1 PHD_FILE: MSMg01no211_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:24 2005
         (242 letters)



>mm_chr11_32027111_32027752
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccttcttggtggacaggagagggacacctttatgaacaaacatgtcttgctttgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tgcccttcttggtggacaggagagggacacctttatgaacaaacatgtcttgctttgggt 260

                                                                       
Query: 61  agagagtttttctgtttctccatcttctgtctttgattcaactgtccttgccaacgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagtttttctgtttctccatcttctgtctttgattcaactgtccttgccaacgggga 320

                                                                       
Query: 121 gaagcagctaagctctggtgggcacagagcccagggaggagacagggacacgtgtgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcagctaagctctggtgggcacagagcccagggaggagacagggacacgtgtgctct 380

                                                                       
Query: 181 gtatctgctgtggcctccccctcctcctctgaaggcctaggtttaatgtggagtcattaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatctgctgtggtctccccctcctcctctgaaggcctaggtttaatgtggagtcattaa 440

             
Query: 241 tg 242
           ||
Sbjct: 441 tg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)