BAC Information

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BAC

Clone NameMSMg01-212B05
Chromosome11 (Build37)
Map Location 79,200,281 - 79,348,290
singlet/doubletdoublet
Overlap geneNf1, Omg, Evi2b, Evi2a
Upstream geneOTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
Downstream geneRab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212B05.T7 (MSMg01no212_b05.b1)MSMg01-212B05.TJ (MSMg01no212_b05.g1)
ACCAG393564AG393565
length740743
length of high quality
(start - end)		665 (46 - 710)622 (75 - 696)
definitionCHROMAT_FILE: MSMg01no212_b05.b1 PHD_FILE: MSMg01no212_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:44 2005CHROMAT_FILE: MSMg01no212_b05.g1 PHD_FILE: MSMg01no212_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,347,656 - 79,348,290)(79,200,281 - 79,200,902)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATACCAGGCTGATTGTTAACTCACAGAGATCCACCTCC
CTCTGCCTCCTGAGTGCTGGGCACTAAAGGGCTGCATCATTACTGCTCAG
CCCAGGGATTATAAATTTTATCTTGGGATAGGAAGGAAAAGTCTTCCTCA
AAACCCAAAGAGAAGGATCTGAGAAGTGAAAAGACAGTCTGGAGTTTGGC
TATAATCTGAGTCATAGATAAAATTCTCCCCCATGGTTAGATTTATCCAG
GCTGTTCAGCTGTATAAGCTAATGTTCCATGTTTTGATTAAACCACATTA
GGTCATACACCACGTCCACTTGGCTTGGGTCCTGGAAATCTGACTGGAGC
AGTGAAGGAATCAAGAAAGGGCTGACACAAATGCACAAGCAGACAAGCTG
GGGGGAGGTGGGCTGTGTGCACTCTGATGGTGCTGCACCAACAACTGCAG
CAAGCCTAACCCTCAGGAAATGTATTAGGTACAGCGAGGCCACCTAGTCT
TGACAGGAGACTTCTGTAAGTGAGCAGTCTCCAGCTTTACCGACCAGGGG
GAAAGAGAGCTGCAATTGCCAACTTTGGCACACACTGGTCAACTGTTGGT
AAACACTCATATTTGCACACCCTGCCAACATCCTAGGGACGAGAGGACGG
CTCTGCAGTCCTTCCCAGCCCACCATGGGTGTATGGTGGT

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCTTGAGAATGAGGTGGAACACTG
AAAGGTCAGTGTGGGACACTGAGGACACACTAAGAGTCTTTGTGGTAGAT
GAATATGAATTCTGTTAATACAGATGACCTGATAGCTCAGTCTAGAGAAA
ATTATTCTCTCAGCTTTTATAAATCCCATAGATATTTAAGTTTACTTAAA
ATGTTAAGTTTGAGCCCCATTTCTGTCTCTTAAGATTTTGTTTTAAGAAA
ATATTTTTATGAAGGAATCACTATTCCATTTAATTATTTTTCAGATATCT
TTAGACCCGTGCCTTTGTATAGTTGGAAGAATGTGGTCAGCACACCAAGG
GTAGTCTTACTTTCCTGCCTTCATGATATGGTTTCAACTTTATACAGACC
CCGACAATGGGATCTATCCTTTCTTTGTTTGAAGCTGTCCTTCTGAGGAT
AGCTACTACCAGAAGATTTGTGTAAATGTGAGCATTTTCATAGGCATGTG
GAGGAGTCATTGAGTACCACGCAGTTCTTTCCCAGGTTGCCTCTGAGTCG
CTGTGTCTACTTATTTCAATTAAGACTTTCACTTTTTCAAGATGTTTTCT
GCTGCATACATTATTTATATTCTTCCCTAATCTTAATTTTCCCCAAACAT
GGGTAGGTGTTTATATAAATACATAATGAATATTTGTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_b05.b1 MSMg01no212_b05.b1 CHROMAT_FILE:
MSMg01no212_b05.b1 PHD_FILE: MSMg01no212_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:44 2005
         (665 letters)



>mm_chr11_79347348_79348412
          Length = 1065

 Score = 1176 bits (608), Expect = 0.0
 Identities = 629/636 (98%), Gaps = 1/636 (0%)
 Strand = Plus / Minus

                                                                       
Query: 30  ttgttaactcacagagatccacctccctctgcctcctgagtgctgggcactaaagggctg 89
           |||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 943 ttgtaaactcacagagatccacctccctctgcctcccgagtgctggg-attaaagggctg 885

                                                                       
Query: 90  catcattactgctcagcccagggattataaattttatcttgggataggaaggaaaagtct 149
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 catcattactgctcagccgagggattataaattttatcttgggataggaaggaaaagtct 825

                                                                       
Query: 150 tcctcaaaacccaaagagaaggatctgagaagtgaaaagacagtctggagtttggctata 209
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 824 tcctcaaaacccaaagagaaggagctgagaagtgaaaagacagtctggagtttggctata 765

                                                                       
Query: 210 atctgagtcatagataaaattctcccccatggttagatttatccaggctgttcagctgta 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atctgagtcatagataaaattctcccccatggttagatttatccaggctgttcagctgta 705

                                                                       
Query: 270 taagctaatgttccatgttttgattaaaccacattaggtcatacaccacgtccacttggc 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 taagctaatgttccatgttttgattaaaccacattaggtcatacaccacgtccacttggc 645

                                                                       
Query: 330 ttgggtcctggaaatctgactggagcagtgaaggaatcaagaaagggctgacacaaatgc 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttgggtcctggaaatctgactggagcagtgaaggaatcaagaaagggctgacacaaatgc 585

                                                                       
Query: 390 acaagcagacaagctggggggaggtgggctgtgtgcactctgatggtgctgcaccaacaa 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acaagcagacaagctggggggaggtgggctgtgtgcactctgatggtgctgcaccaacaa 525

                                                                       
Query: 450 ctgcagcaagcctaaccctcaggaaatgtattaggtacagcgaggccacctagtcttgac 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctgcagcaagcctaaccctcaggaaatgtattaggtacagcgaggccacctagtcttgac 465

                                                                       
Query: 510 aggagacttctgtaagtgagcagtctccagctttaccgaccagggggaaagagagctgca 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aggagacttctgtaagtgagcagtctccagctttaccgaccagggggaaagagagctgca 405

                                                                       
Query: 570 attgccaactttggcacacactggtcaactgttggtaaacactcatatttgcacaccctg 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 404 attgccaactttggcacacactggtcaactgttggtaaacactcatatttgtacaccctg 345

                                               
Query: 630 ccaacatcctagggacgagaggacggctctgcagtc 665
           ||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccaacatcctagggacgagaggacggctctgcagtc 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no212_b05.g1 MSMg01no212_b05.g1 CHROMAT_FILE:
MSMg01no212_b05.g1 PHD_FILE: MSMg01no212_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:44 2005
         (622 letters)



>mm_chr11_79200081_79201102
          Length = 1022

 Score = 1203 bits (622), Expect = 0.0
 Identities = 622/622 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttgagaatgaggtggaacactgaaaggtcagtgtgggacactgaggacacactaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttgagaatgaggtggaacactgaaaggtcagtgtgggacactgaggacacactaag 260

                                                                       
Query: 61  agtctttgtggtagatgaatatgaattctgttaatacagatgacctgatagctcagtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctttgtggtagatgaatatgaattctgttaatacagatgacctgatagctcagtcta 320

                                                                       
Query: 121 gagaaaattattctctcagcttttataaatcccatagatatttaagtttacttaaaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaattattctctcagcttttataaatcccatagatatttaagtttacttaaaatgt 380

                                                                       
Query: 181 taagtttgagccccatttctgtctcttaagattttgttttaagaaaatatttttatgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtttgagccccatttctgtctcttaagattttgttttaagaaaatatttttatgaag 440

                                                                       
Query: 241 gaatcactattccatttaattatttttcagatatctttagacccgtgcctttgtatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatcactattccatttaattatttttcagatatctttagacccgtgcctttgtatagtt 500

                                                                       
Query: 301 ggaagaatgtggtcagcacaccaagggtagtcttactttcctgccttcatgatatggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagaatgtggtcagcacaccaagggtagtcttactttcctgccttcatgatatggttt 560

                                                                       
Query: 361 caactttatacagaccccgacaatgggatctatcctttctttgtttgaagctgtccttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caactttatacagaccccgacaatgggatctatcctttctttgtttgaagctgtccttct 620

                                                                       
Query: 421 gaggatagctactaccagaagatttgtgtaaatgtgagcattttcataggcatgtggagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggatagctactaccagaagatttgtgtaaatgtgagcattttcataggcatgtggagg 680

                                                                       
Query: 481 agtcattgagtaccacgcagttctttcccaggttgcctctgagtcgctgtgtctacttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtcattgagtaccacgcagttctttcccaggttgcctctgagtcgctgtgtctacttat 740

                                                                       
Query: 541 ttcaattaagactttcactttttcaagatgttttctgctgcatacattatttatattctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcaattaagactttcactttttcaagatgttttctgctgcatacattatttatattctt 800

                                 
Query: 601 ccctaatcttaattttccccaa 622
           ||||||||||||||||||||||
Sbjct: 801 ccctaatcttaattttccccaa 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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