Query= MSMg01no212_f05.b1 MSMg01no212_f05.b1 CHROMAT_FILE:
MSMg01no212_f05.b1 PHD_FILE: MSMg01no212_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:03 2005
(633 letters)
>mm_chr11_38492496_38493528
Length = 1033
Score = 1201 bits (621), Expect = 0.0
Identities = 627/629 (99%)
Strand = Plus / Minus
Query: 5 gaattctgtgctgccacattcaggaggcaagtggacactggtgaacactcagatgtgtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gaattctgtgctgccacattcaggaggcaagtggacactggtgaacactcagatgtgtct 774
Query: 65 ctctcagatcaactgcagaaaacacactgttcctataacacactgttatcaagttcatga 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctctcagatcaaatgcagaaaacacactgttcctataacacactgttatcaagttcatga 714
Query: 125 acttgacagcgcagggcaacagttccctattgtaggaagaaatgaaagcctactgcatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 acttgacagcgcagggcaacagttccctattgtaggaagaaatgaaagcctactgcatat 654
Query: 185 ggctgtcctcatgcctttctcttgtttgatccttttgaattcattttcatactccctcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggctgtcctcatgcctttctcttgtttgatccttttgaattcattttcatactccctcta 594
Query: 245 ctggacttaatcaggcctaaacaaatgaatttcggtggttgcaccctgttgacctgtgat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctggacttaatcaggcctaaacaaatgaatttcggtggttgcaccctgttgacctgtgat 534
Query: 305 gatactggagtgctattcctttgtgacttgttgagtggaaatcagtcatgggaggtcaac 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gatactggagtgcttttcctttgtgacttgttgagtggaaatcagtcatgggaggtcaac 474
Query: 365 aatgaactcagctttttggtagtgtgtattgaaatgaatcaaagaagggctaaattcaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aatgaactcagctttttggtagtgtgtattgaaatgaatcaaagaagggctaaattcaat 414
Query: 425 gccctgtggattaagcagtttcacctctgatctgatatcagaaacaaatagatttctggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gccctgtggattaagcagtttcacctctgatctgatatcagaaacaaatagatttctggc 354
Query: 485 ataaagtattgctacaaagatgatatggaatacatttttaaataagtaatattgtttgat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataaagtattgctacaaagatgatatggaatacatttttaaataagtaatattgtttgat 294
Query: 545 gctgagaaccaattatttatacatagtatataaacatactacaattcaaaacacattggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gctgagaaccaattatttatacatagtatataaacatactacaattcaaaacacattggc 234
Query: 605 tatctatgatgtttgtatctgtaatccta 633
|||||||||||||||||||||||||||||
Sbjct: 233 tatctatgatgtttgtatctgtaatccta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no212_f05.g1 MSMg01no212_f05.g1 CHROMAT_FILE:
MSMg01no212_f05.g1 PHD_FILE: MSMg01no212_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:03 2005
(564 letters)
>mm_chr11_38390137_38391093
Length = 957
Score = 1021 bits (528), Expect = 0.0
Identities = 552/564 (97%), Gaps = 7/564 (1%)
Strand = Plus / Plus
Query: 1 tcaatattgactggaaaatgtgaagggacttaaacagaaaattagttgggcttgtttctg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tcaatattgactggaaaatgtgaagggacttaaatagaaaattagttgggcttgtttctg 260
Query: 61 gaacgtgcttagattttgcatgataagtcatatatgaatgtgtgtaattttaaaaacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacgtgcttagattttgcatgataagtcatatatgaatgtgtgtaattttaaaaacatt 320
Query: 121 gtatctaaactattgtgcgtgaaagatttccctatagctcatcagtgaattcctgtgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatctaaactattgtgcgtgaaagatttccctatagctcatcagtgaattcctgtgtat 380
Query: 181 tgcattcaatcaataccaaatcttaagaaattttttgtttccttctactacttcaaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcattcaatcaataccaaatcttaagaaattttttgtttccttctactacttcaaagtc 440
Query: 241 attttcaaactggctcatgagacaagttcctgctagtgtttacaatcagataaaggtttt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttcaaactggctcatgaaacaagttcctgctagtgtttacaatcagataaaggtttt 500
Query: 301 acatgcaagtatatttttaattatttgtaaagttaagatattgtaataacagttcaaatc 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggcaagtatatttttaattatttgtaaagttaagatattgtaataacagttcaaatt 560
Query: 361 ctatctgaaatattacaaaagttagataaattttcatttctcaagtaggacaattcaggg 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ctatctgaaatattacaaaagttagataaattttca-------agtaggacaattcaggg 613
Query: 421 aaaatatgtttctgaggttttagctatatttttgtccatatttctcctataatattattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaaatatgtttctgaggttttagctatatttttgtccatatttctcctataatattattt 673
Query: 481 tatagatttttctgaaagtttaaatgaactaaacaaacagtaaaaactatatgactcctt 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 674 tatagatttttctgaaagtttaaatgaactaaacaaacagtaaaaattatatgactcctt 733
Query: 541 tcacaaagggatagaaataggctt 564
||||||||||||||||||||||||
Sbjct: 734 tcacaaagggatagaaataggctt 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 957
Length adjustment: 10
Effective length of query: 554
Effective length of database: 947
Effective search space: 524638
Effective search space used: 524638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
