BAC Information

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BAC

Clone NameMSMg01-213B15
Chromosome11 (Build37)
Map Location 120,822,804 - 120,920,818
singlet/doubletdoublet
Overlap geneCsnk1d, Cd7, Sectm1b
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3
Downstream geneSectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213B15.T7 (MSMg01no213_b15.b1)MSMg01-213B15.TJ (MSMg01no213_b15.g1)
ACCAG394213AG394214
length737736
length of high quality
(start - end)		364 (374 - 737)255 (421 - 675)
definitionCHROMAT_FILE: MSMg01no213_b15.b1 PHD_FILE: MSMg01no213_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:03 2005CHROMAT_FILE: MSMg01no213_b15.g1 PHD_FILE: MSMg01no213_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,822,804 - 120,823,167)(120,920,564 - 120,920,818)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCA
AGAAGTCCCATTTCCAAACAGGAACAGACCTAGTTCTAGCAGCCTGACAA
GATTTTCCATGCCTCCCCGTCTGGTGCTGCTGTGGAAGTCAGGTCTACAC
AGATGCCAGTAGATCTGTGGATGTAGAATCCTTCATGGATTCTAGTGCAT
GCCAGGAGCTAAGGCAGTTGGACATACCCACTTCAGAGCTTCCCTTCCAG
GCAAGGTGAAAATCTAAGGCACTAACACAGAGGCCTGCCTAGGTTAGGTA
CTTAGGAGGGCTCACAGAACTGTCACAACATCACTAAGGGAACTCACATC
TACTCTTGACTCCAGAGTCCAAGCAGAAATCATCTTTCTGGCACCTACTC
CACTAGCTTCCCCACACCCACAAATGGACAAGCAGGAATGTCATCCTGAA
AAAGTTGACTCTGTTGGGTTTGTAAAACCAACACACAGAAGGCTGATGCA
AAAGGATTGCTCAGTTCTAGGCCAGCCTAAGCTATAGAAACTATCAACCT
CAGAACCCCAACCCACACCAAGTTAGCTTTCATGTAGCTTACACATGCTG
CTGAAAGAAAGACCACACAAAGGGGAGGGAAGAAAGGTAGAAGTCATTAT
GAATTTATTATTTACACAATTGTTAAAGTACACAAATACAGTGGTAGTAC
AAACGCACAGCTCAGAGACTGGTCACCAAGACACAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCGATCCTCCTTTTCTTTCCCAAGTCCTCATTG
TTTCCTTGTTTTTTCTCAGAAAGGGAAGTACACAGTGCTGGAGGTGGACA
TAGCCACAGGCCAGACTTGAGGCCATTGGCCGGGTCTGCTGTGAGTGCCG
GCTCTCAAAATCCAGAGAGCCCGGTCACTGACATCTGCATGCCATGACCC
AGGGTGCCACTCTCTGGGCTGAGCTGGAGCTAGACTCTCAGAAGGTCAGG
GCTGACAAGGGACAAATGGCAGAATATGCACACTGGAGGGTGAACTCAAA
CATTTTTCTCTTACACGCCCACAGGATCCATCTGACCTGGTGGAAAGAGA
GTATCTACCCGCGACTCTCAGACAGAAGGTCCAAAACACCCAAAGAAGAA
AAGCATAGACTATAATGTTGTCTGGGGTTCTGGTGAAGACAAAACTCCTC
TGTATGAAGGGGCCCAGGGCTCAGAGAGGGAAAGACTGATGGATTGATGT
TTCTTCTACCCCCTTGACTGGGCTGCTCCCAAATCCATTTCTAACTGGGT
TGCTAAGAGAGGCGAAGTTAGGCTACCGGAGAGAAAGAGGGGCTAGCCAT
CCAATTTCAGAAACAGCTTTGAGAACTGTGAAGTGTCCCAAGGGACAGCT
CAATGCTTGCCATTTTCTCTGGTAGCCAATCTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_b15.b1 MSMg01no213_b15.b1 CHROMAT_FILE:
MSMg01no213_b15.b1 PHD_FILE: MSMg01no213_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:03 2005
         (364 letters)



>mm_chr11_120822604_120823367
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaatcatctttctggcacctactccactagcttccccacacccacaaatggacaagc 60
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 201 cagaaatcatctttctggcacctactccactagcttcccaatacccacaaatggacaagc 260

                                                                       
Query: 61  aggaatgtcatcctgaaaaagttgactctgttgggtttgtaaaaccaacacacagaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaatgtcatcctgaaaaagttgactctgttgggtttgtaaaaccaacacacagaaggc 320

                                                                       
Query: 121 tgatgcaaaaggattgctcagttctaggccagcctaagctatagaaactatcaacctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgcaaaaggattgctcagttctaggccagcctaagctatagaaactatcaacctcag 380

                                                                       
Query: 181 aaccccaacccacaccaagttagctttcatgtagcttacacatgctgctgaaagaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccccaacccacaccaagttagctttcatgtagcttacacatgctgctgaaagaaagac 440

                                                                       
Query: 241 cacacaaaggggagggaagaaaggtagaagtcattatgaatttattatttacacaattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacaaaggggagggaagaaaggtagaagtcattatgaatttattatttacacaattgt 500

                                                                       
Query: 301 taaagtacacaaatacagtggtagtacaaacgcacagctcagagactggtcaccaagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagtacacaaatacagtggtagtacaaacgcacagctcagagactggtcaccaagaca 560

               
Query: 361 cagg 364
           ||||
Sbjct: 561 cagg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no213_b15.g1 MSMg01no213_b15.g1 CHROMAT_FILE:
MSMg01no213_b15.g1 PHD_FILE: MSMg01no213_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:03 2005
         (255 letters)



>mm_chr11_120920364_120921018
          Length = 655

 Score =  485 bits (251), Expect = e-142
 Identities = 254/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagaaggtccaaaacacccaaagaagaaaagcatagactataatgttgtctggggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gacagaaggtccaaaacacccaaagaagaaaagcatagactataatgttgtctggggttc 396

                                                                       
Query: 61  tggtgaagacaaaactcctctgtatgaaggggcccagggctcagagagggaaagactgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggtgaagacaaaactcctctgtatgaaggggcccagggctcagagagggaaagactgat 336

                                                                       
Query: 121 ggattgatgtttcttctacccccttgactgggctgctcccaaatccatttctaactgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggattgatgtttcttctacccccttgactgggctgctcccaaatccatttctaactgggt 276

                                                                       
Query: 181 tgctaagagaggcgaagttaggctaccggagagaaagaggggctagccatccaatttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgctaagagaggcgaagttaggctaccggagagaaagaggggctagccatccaatttcag 216

                          
Query: 241 aaacagctttgagaa 255
           |||||||||| ||||
Sbjct: 215 aaacagctttaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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