BAC Information

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BAC

Clone NameMSMg01-215N03
Chromosome11 (Build37)
Map Location 9,544,720 - 9,545,141
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215N03.T7 (MSMg01no215_n03.b1)MSMg01-215N03.TJ (MSMg01no215_n03.g1)
ACCAG395932AG395933
length946762
length of high quality
(start - end)
---422 (129 - 550)
definitionCHROMAT_FILE: MSMg01no215_n03.b1 PHD_FILE: MSMg01no215_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:35 2005CHROMAT_FILE: MSMg01no215_n03.g1 PHD_FILE: MSMg01no215_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCGACTCCCATAAGGTCACAGAACCGCCGGAAAATGGGGTTCAAATAT
CCTTAGAAGAAACGCCAAAATTTCCTTCTTGGGAGAAAAAGAACAAACAT
ATTTTTCCCGTTTGCCTGCCACAAAAAAAACAAAAGAGAGTTTGTTTGTT
TCTTTTTGGTTGGAAAGAAAAAAATAAATATTTTTTGTGGGGGGGAAACC
CCCAAAAACCTCCATTTAAAAACCCACTCCCCCCCCCCCCCTGGAAAAAA
AAAAAAAACAAAGCCGCGCCCCCCTTGGCCCCCCCGGGGTTCCCTCTCTT
AATTTCCCCCCCCCCTCCCCCCCAGGGGGAGGGGGGAAGGAGGGGATTAT
CCCACAAGGGGGGGGGGNGGAAAACACACCCCCCCCTCCTCCTCTTTCTC
TCTGTGGGGGGCCCCCCCCTCCGCCCCCCCCCCCCGGCGCGGCGCCCCCA
AAAAAATATTATATTTCTTCTCTCCCCCCCCNCCCCCCCCCCCAAAAAAA
GACAAAAAAGAAGAAAAATCAATCTGTGGTGGGGGTGGGATCCGCGCTTG
AGGTGGGCTCAAAATTATTTTTATTTTTTTCGTGGGGGGGGCGGCGGCCG
CGGCCCCCCCTCCCCCCTCCCGAGCGGAGAAACTCAAAGAAGGGGGTTGG
CTCTGTTCCGTTTTCCTATAAAAAAAAGAGGAGATANTAAGGGGACGAGA
TAGTCGGTCAACTACCTAACATGATATATAAAGAACAGCACTTCAATGAT
NCTCCGTACACCNCCTCCGCCGGGCGCCACACAACTCTACAAAACAAACA
AAAATTAACCGTCTCGCGCCCGCGGAGCGGATGAGTGTGTCGCGTCTAAC
GCGGTCCCCGTTACCGAGTGCGCCACTCACCGCCGCCNCTAATGATGGTC
TCTTCACTACATCACCCACCACGCCACATAGCGCGCATTCCGCTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGTCCGAAATCTGGTGGGACACCTCTACTCTTTGAA
ATTCAGATTATGAAAAATGTCATCACCAGCTGTCACTTTACCAAAGGGGA
ATGCACTGCTTTTGTTTTTCAATGGGTTTCATTACAAACAAAGCAGACTG
ATGTTGGGGCACAATGAGGATGGAAAATGACATGACTGGGGCCTGTGACA
GCTTAGATGTATGGATATTTTGGCTGGGGACTCAGATTCACCGTGGTTCC
TGTGAATTAACAAATATTTGTTAGCCTCCTTTATCAGAGCTGGTGACATG
ATTCCTACTTTAGAAAGACAGTAGTGTGTCTTCAGACACAGGACTGAGCA
CATGCTATCCTGCAGCGTGCCTCCGACACTGGTGATCATCATGTTATGAG
ATGCAGCTCACTTCAAATCAAAAAATACCATGGCACATTTGTGCATTGCT
GGAGATTGAGTGGTGAGTGGGACATGAGGTCTATCGTATATGGAGTGGAC
AGAACAATGAAAATCAGAAAGTTCCCTTGCATGTGAGCTAGGAGTGGAGA
AAGGCCAGAATGCCCATAAATTGCATTATGGGAAAGGGTTCTAATGAGCA
GCCTTTGTGGGCCGAAAAAGGCATCTAGGCAAAAATGTGCCATCAAAAGA
GAGGTGTTTAAGAAAATAACAGTCATGAGTCCCTGGTTCTTTAATGGCCT
TGAGTAATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_n03.g1 MSMg01no215_n03.g1 CHROMAT_FILE:
MSMg01no215_n03.g1 PHD_FILE: MSMg01no215_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:35 2005
         (422 letters)



>mm_chr11_9544520_9545341
          Length = 822

 Score =  785 bits (406), Expect = 0.0
 Identities = 418/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgtcactttaccaaaggggaatgcactgcttttgtttttcaatgggtttcattacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgtcactttaccaaaggggaatgcactgcttttgtttttcaatgggtttcattacaaa 260

                                                                       
Query: 61  caaagcagactgatgttggggcacaatgaggatggaaaatgacatgactggggcctgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 caaagcagactgatgttggggcacaatgaggatggaaaatgacatgaatggggcctgtga 320

                                                                       
Query: 121 cagcttagatgtatggatattttggctggggactcagattcaccgtggttcctgtgaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcttagatgtatggatattttggctggggactcagattcaccgtggttcctgtgaatt 380

                                                                       
Query: 181 aacaaatatttgttagcctcctttatcagagctggtgacatgattcctactttagaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaatatttgttagcctcctttatcagagctggtgacatgattcctactttagaaaga 440

                                                                       
Query: 241 cagtagtgtgtcttcagacacaggactgagcacatgctatcctgcagcgtgcctccgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 441 cagtagtgtgtcttcagacacaggactgagcacatgctatcctgcagcgtgcctctgaga 500

                                                                       
Query: 301 ctggtgatcatcatgttatgagatgcagctcacttcaaatcaaaaaataccatggcacat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctggtgatcatcatgttatgagatgcagctcacttcaaatcagaaaataccatggcacat 560

                                                                       
Query: 361 ttgtgcattgctggagattgagtggtgagtgggacatgaggtctatcgtatatggagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgcattgctggagattgagtggtgagtgggacatgaggtctatcgtatatggagtgg 620

             
Query: 421 ac 422
           ||
Sbjct: 621 ac 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)