BAC Information

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BAC

Clone NameMSMg01-217A19
Chromosome11 (Build37)
Map Location 92,928,452 - 92,928,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545
Downstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217A19.T7 (MSMg01no217_a19.b1)MSMg01-217A19.TJ (MSMg01no217_a19.g1)
ACCAG396710AG396711
length1,2631,278
length of high quality
(start - end)
423 (29 - 451)382 (69 - 450)
definitionCHROMAT_FILE: MSMg01no217_a19.b1 PHD_FILE: MSMg01no217_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:20 2005CHROMAT_FILE: MSMg01no217_a19.g1 PHD_FILE: MSMg01no217_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNATACACTGGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTTT
CTCTACAACCGTGTTTCTTAAAAAATGCAGAGACCCTTTAAAATAATCCC
TCCTGTCCTGGTGACCTTCAATCATACCACTATTTTCCATGCTACTTTGT
AACTGCAATTTTGCTACTGTTACGAGTCCTAATGTAAATATCTGATAGGC
AAGATATCTGGTATTCGGCCCCTGAAAGGATCATTCAACCCCAAAGGCAT
CGTGACCCCCAGGTTGAGAACCACAGTTTCTATAACATGCAGCCTCCTGT
TATGCTTTCATACCCACCAGAAGCCAAAAACACTAAAGTCACACTGCCAT
AGTTAGGAGCCTCCAGAACAGGTAAACCCCAAAAAGCCTTTCTAAAAATT
TGATTATTTCAGGTGTTTCCTTACAGTGGATAAATCTCTTTAGCATAAGG
ATTATTTTCCCCCCCCCCCCCTAGTTCCAATGAAAATGTAAAGAGACTGA
ATTTTAAATTAACATCTCCTGTTTTGACCTTCGTTTCAGTTTCTCACTTA
GAATTTTGGGTTTTGAATGTTACCAGCAAAATTACTAATTTTTGAAATTC
CAGAAATTGGCACAGGGTTGTAATCTAACAATAACAGCATTATCACAAGC
GAATGCTTGGCAAGATGAAGAGAAGATATTTCTGTGTTTCAGATGTATTT
TACTGGAGACATTAGGATAACCAACATGTTTAAAAATCTCTAGAAACATA
TTTTTTTGTATATGGCTATATTCCCAAACTCAGTACACATGTCTTTTTCA
TTATTATTTTAATTTTTAGAAACAACATTTTATGTTCTTATCTTCTAATT
ATTTTAAATACTTATTTGATCCTCAAGTTTAAAATATTATACAAGAAATT
TCCAACTTCTGCCTTAATTTTATAATATTTTAAAATATAACTTTCCTAAA
AATTTTAATTTTTTAATTTCCTTCCAAAATTTGCCCCTTAAAATGGTCTT
TTACTTTATTTTAAAGAAACAAACCTATCGGTGTGTGGCAACTAAACCCT
CCCATTTGAATTTTCCTATTACCTTATCTTCCTTCACTCCTTTTTAAATA
ACACTCTCTTTTTTTCCTATTTTTTCCCCCCTTATTTTTAAATATATATT
CCTCCCATATTTTTTTATTTTGCCCACTTTTTTTTTTTGGTCCATATTTT
TATGTTTCTCCTCCATAATTTACAAAAAATTCTATTACTTCTTTTATATA
TTCCTACTCCCCT
NNAAAACACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAAGTTAGACTCCAGAGAATCAAATAACCC
TATTAAAAGTGAGGTACAGAGCTAACCCAAGAATTCTTAACTGAGGAATA
TCGAATGGCCAAGAAGCACCTAAGGAAATATTCAACATCCTTAGTCATCA
GGGAAATTCAAATCAAAATAACCCTGAGATTCCACCTCACACAAGTCAGA
ATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCAAGGATGTAG
AGAAAGAGGAGCACTTCTCCATTGCTGGTGGGATTGCAAGCTGGTATAAC
TACTCTAGAAACCAGTCTGATGGTTCCTCAGAAAATTGGACATAATACTA
CTTGATGACCTAGCTATACTATCTTCCTGGGCATATACCCAGAAGATACT
CTTTTTTTTCCCCCCCCCCCCCCTGNTCNANTATGTTCATAAAAAAAAGA
GGGGGAATAGCCAGAAGATGGAAACAGCCCAGATGCCCCTCAACAGAGGA
ATGGATACAGAAAATGTGTTACATTTACACAATAGAATACTATCTGGCTA
TTTAAAACAGTGACTTCATGAAATTCACAGGCAAATGGGTGGATTTAGAA
AATATCATCCTGAGTGAAGTGACTCAGTCACAAAAGACTACATATGGTAT
ATACTCACTAATAAGCAGATATTAGGCAAAGAATGTGGAATAACCAAGAT
ACAACTCATGGACTACATGAAGCTCAAGAGGAAGGAAGACCAAAGAATGG
ATGCTTCAGTCCTACTTAGAAGGGGGAACAAAATAATCAAGGGAAGTAGA
GGGTAGGAGGGAGTTGTTAGTAAGATAAGAGTTGTTTTTCTTCTCTTTTT
TGTTTTTTTTTTCTTTATCCATCTTCTTCTTTCTTTTTTCTTTTTTTTTT
TTATCCTCAATTCTTTATCTCTTATTTTTACTTTTTTTAAATCTTTCCCT
CTTTTTTATTACTTTATTTCTCTATCTCATCTCCCTTATTTTTATCATTT
TTTTTTTATTCTCAATCTTTTTCTTCTTTCATCATCTTTTATTTTCTCTC
ATACCATCTCTTCATTTTTTCTCTCTTTTTTCTTTTTCTCTGTTCTAATT
TGCTTTTTCTTCTTTCTCTTTCCTCTTTTTTTTCCTTATTTCTTTTCCCC
TTCTTTTTCTTTCTTTACCTTTCTCTCTATCATTTACTTTCTCTTATTAT
CTTTTGTTCTTCTTATCTCTTTCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_a19.b1 MSMg01no217_a19.b1 CHROMAT_FILE:
MSMg01no217_a19.b1 PHD_FILE: MSMg01no217_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:20 2005
         (423 letters)



>mm_chr11_92928006_92928828
          Length = 823

 Score =  640 bits (331), Expect = 0.0
 Identities = 368/385 (95%), Gaps = 9/385 (2%)
 Strand = Plus / Minus

                                                                       
Query: 40  ttaa-aaaatgcagagaccctttaaaataatccctcctgtcctggtgaccttcaatcata 98
           |||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 823 ttaacaaaatgcagaaaccctttaaaataatccctcctgttgtggtgaccttcaatcata 764

                                                                       
Query: 99  ccactattttccatgctactttgtaactgcaattttgctactgttacgagtcctaatgta 158
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 763 aaactattttccatgctactttgtaactgcaattttgctactgttacgagtcataatgta 704

                                                                       
Query: 159 aatatctgataggcaagatatctggtattcggcccctgaaaggatcattcaaccccaaag 218
           ||||||||||||||||||||||||||||| |||||||||||||        |||||||||
Sbjct: 703 aatatctgataggcaagatatctggtatttggcccctgaaagg--------accccaaag 652

                                                                       
Query: 219 gcatcgtgacccccaggttgagaaccacagtttctataacatgcagcctcctgttatgct 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gcatcgtgacccccaggttgagaaccacagtttctataacatgcagcctcctgttatgct 592

                                                                       
Query: 279 ttcatacccaccagaagccaaaaacactaaagtcacactgccatagttaggagcctccag 338
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 591 ttcatacccaccagaagccaaaaacactaaagtcacactaccatagttaggagcctccag 532

                                                                       
Query: 339 aacaggtaaaccccaaaaagcctttctaaaaatttgattatttcaggtgtttccttacag 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aacaggtaaaccccaaaaagcctttctaaaaatttgattatttcaggtgtttccttacag 472

                                    
Query: 399 tggataaatctctttagcataagga 423
           |||||||||||||||||||||||||
Sbjct: 471 tggataaatctctttagcataagga 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)