BAC Information

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BAC

Clone NameMSMg01-218A20
Chromosome11 (Build37)
Map Location 73,593,286 - 73,593,574
singlet/doubletsinglet
Overlap genenone
Upstream geneCyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389
Downstream geneOlfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218A20.T7 (MSMg01no218_a20.b1)MSMg01-218A20.TJ (MSMg01no218_a20.g1)
ACCAG397366AG397367
length755722
length of high quality
(start - end)
316 (45 - 360)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no218_a20.b1 PHD_FILE: MSMg01no218_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:57 2005CHROMAT_FILE: MSMg01no218_a20.g1 PHD_FILE: MSMg01no218_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTCGACTTTCACAGTTGTCTTTTTCTAATGTGATCATTTCAAAC
AGACATTCATAGTTTTAAAAAGTATTGAGTTATGGAGAGTCTAAAACATT
TTGGAAAGATGTGACTATAAGAAAATCATTCATGTATCTTTTACTCTTCT
CCATGTTACCTACATGGCACATTCCTGTGCTGGTACCCAACTATGTTCAA
TGGTATGTCTGTTTGAGTATACAGTTGTTGTTGTTTCAAAACAAGAGGTA
ATCCTTTGTCTTGAATAAAACAGACCTGTGGATTGTTGATGGTGAAATGA
CAGAAGTAAGATTTCCATGCATTCCTGAAACGAAACCCCATGTGATGTGA
TGATTCTAAACCAAGGACCCCCCCAATTAAAAAAAGAAAATTAGACGAGC
TCTTCAGAATAATGAACCAAGGAAATAGTACACCATGGCTTTTATGTGAG
TTTTATCTTTTTTACCTGAATAGTTGGTGTCTGAATTGTAATATATTATA
CCCATTTTATGAAGCAGTATAAGATTATTGTTTTGAAATTACTATCATTA
TTTTGTTTGCATGTATATGATAAGTATACTTGACTGAACATTGATTTATC
ACCCTTGAAAAAAATTTATAGAGTATGTTTTGCTAGTACTTTATCTTTTT
CCTCTTCTTGCACATTAATGATCCTTTTATTTTTTTTATTCTATATTCTG
TCTTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGTGAGCTGAATGAATAATAACTGCT
AGAACTATTTCTTTGGACAGTCTTATCTGCTATTCAGGTAAAAACTGTGA
GATTTACAGCTGAAGAAGTAAAGTCCATTGGGTCAGCAACAGCAACTATC
ACAAGTGATCTTTGCTTTGTAGTCTTTTCACATAAGCCTACATAAACCAT
GGGCCCCACTCAGTCACAGAATACAAATAATTCTGAGACACTTGGTACAC
AATTTCCCTTATATTACTCTAAGTTTCTGTTTTTCTATTAACTTCTCACA
TTATGAAAGGTTTTATGTTACTCCACCCCCCACCAATGTTAATAAATAAA
TTAAATGTTAAAAACACAGCACAACACCTTCATAGAAATACCTTGAGCTG
TAATTTGACCAAAATGGATTTTAAGCCCTATACCAGTTTCTATAAAAACT
GTCATGTTAGGTATGGATAGTTGAATATGAACTCAAGGGGGGATTAAAAT
TAATTGACACTTATGAAGTGTTCATTGTATATATTTTTTCTCCATCATTA
TCAGTGGAATCATATGTATAGTGGAATCATATGAAGCATAAAAATATTAG
TCATTATTAGTATTATTAAAAAGAGCATTGCATTTTGTACACCCAAATAC
TTTCCATATATACACAATCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_a20.g1 MSMg01no218_a20.g1 CHROMAT_FILE:
MSMg01no218_a20.g1 PHD_FILE: MSMg01no218_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:57 2005
         (292 letters)



>mm_chr11_73593086_73593777
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgagctgaatgaataataactgctagaactatttctttggacagtcttatctgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caggtgagctgaatgaataataactgctagaactatttctttggacagtcttatctgcta 430

                                                                       
Query: 61  ttcaggtaaaaactgtgagatttacagctgaagaagtaaagtccattgggtcagcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttcaggtaaaaactgtgagatttacagctgaagaagtaaagtccattgggtcagcaacag 370

                                                                       
Query: 121 caactatcacaagtgatctttgctttgtagtcttttcacataagcctacataaaccatgg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 caactatcacaagtgatctttggtttgtagtcttttcacataagcctacataaaccatgg 310

                                                                       
Query: 181 gccccactcagtcacagaatacaaataattctgagacacttggtacacaatttcccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gccccactcagtcacagaatacaaataattctgagacacttggtacacaatttcccttat 250

                                                            
Query: 241 attactctaagtttctgtttttctattaacttctcacattatgaaaggt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attactctaagtttctgtttttctattaacttctcacattatgaaaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)