BAC Information

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BAC

Clone NameMSMg01-218I13
Chromosome11 (Build37)
Map Location 46,388,905 - 46,389,192
singlet/doubletsinglet
Overlap geneBC053393
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256
Downstream geneDppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218I13.T7 (MSMg01no218_i13.b1)MSMg01-218I13.TJ (MSMg01no218_i13.g1)
ACCAG397669AG397670
length761761
length of high quality
(start - end)
---294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no218_i13.b1 PHD_FILE: MSMg01no218_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:34 2005CHROMAT_FILE: MSMg01no218_i13.g1 PHD_FILE: MSMg01no218_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCGAGCNGCCGNGGAAN
NNNNNGNTTTGACCAGNACCGGGGGNNNAANGGGGNNANNNGANNNNCGG
GAGNCCANCTTCTTGTGTNCCANAAGAAAGGGGAGANNAGNCCCCNANCC
GAANNAGGANAGGNAAAGANCCNNNCCCAANCNANGGGNGGCCNNNNGGN
CNNANGGACGGGGNCNNNGGCNNGGCAGAAGCNNGGCAANNNNAGGAGGN
CTTATTTANCGANNCNNGANCNNACAGCACAAGCCANGGCGGNNCNANNC
AGGAANNNNNCCCCTGTTTCTCTTCTTCGAGGCNNNNCCCNACNNNCNCC
ACNATTTTTTTTTTTGTCCCCCGCCCCCCGCGGAGNANCNAAANCCACNN
AGAANGGACCCCACNCCAGGACGNCAGNNCCAAAACGGGGGNCGGGCGGG
GACANGACAACCGCCAGNCGCGCCAGCACCANAAGAGGAAAACGCGGACA
CANAACCACGGGACGGGCCGAGCNCCCCGGCCAAACGCCAAGCGACCACA
GGAGCGAGGACACAACGCAGAGCCAACAGAACGGAACCAACGAGCGACGC
GGCAGGCGCAAAGAGAGGAGAAAAGAGCGACCAAAACGAGGCCCCGCGAG
AACCGCCCAAGCTTTATTTTTTTTTCGCGCCAGAGTTTTGGGATCTTTGA
GTAACTCGCAACAGGGAGATGGGCCTTTTTTGTGATATAAGGATGACTGG
TGTAGAGATGT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGACCAACCTCAGCTCAGAAGACTCTGTC
CTAAACCACCCAGCCCCTCCCTTTGATGCTGGTCACTAACTCTTTGCCCA
TCTCTTGGTATAAAGAGCAAGGTTTTCATTTACAGCACTGTGGCTTCAAA
GCAGAAGGTTAGTAACTTCAATGGCAGTTTTCAGGAAAGGTTTTATAACA
CCATTGGGAGGAGGGAAGTTTTAGGATCAGTCCTCAAAAAAGAAAAGTCC
AAACAGGTATCCCTTCCTTTAAGTGGATAACATTCTAGACAGAGTAAGAA
CCAGTTACACAAGATTTTTTTCACGCCCCGCCACACAATCAGACGATTCA
GTCCAGAACTAAAATCATGCAACTTCTAAAACTAAAACAAACATTTAAAT
ATGAATCTTCTTGGATGGTGAAAGAAAACCTCTAGTGTCAATGGCTTCTG
AGTTGTCTTTAGAGGAACTCTGAGGGCTGAGGATATGGCTCAGTGCTTGC
CTAGCCCACGCCAGTCCCTGGGATGGATCCCTGGTCCAGGAAATAAGCCA
AACCACCAAACAACAAAGAACACAAAACAAGGCACTGTGAGTTTCACTAA
CCAGTCACCGATACTCAGACCTAAGCTGTGAGTTTGTACATGGCCTGAGA
AAGCACAGTCCTCACTGTATCAGTGTGTATTTCATACTGGGACACACAGT
ATTTGATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_i13.g1 MSMg01no218_i13.g1 CHROMAT_FILE:
MSMg01no218_i13.g1 PHD_FILE: MSMg01no218_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:35 2005
         (294 letters)



>mm_chr11_46388705_46389392
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 284/294 (96%), Gaps = 6/294 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccaacctcagctcagaagactctgtcctaaaccacccagcccctccctttgatgct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagaccaacctcagttcagaagactctgtcctaaaccacccagcccctccctttgatgct 429

                                                                       
Query: 61  ggtcactaactctttgcccatctcttggtataaagagcaaggttttcatttacagcactg 120
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 428 ggtcactaactctttgcccatctcttgatataaagagcaaggttttcatttacaacactg 369

                                                                       
Query: 121 tggcttcaaagcagaaggttagtaacttcaatggcagttttcaggaaaggttttataaca 180
           |||||||||||||||||||||||      |||||||||||||||||||||||||||||||
Sbjct: 368 tggcttcaaagcagaaggttagt------aatggcagttttcaggaaaggttttataaca 315

                                                                       
Query: 181 ccattgggaggagggaagttttaggatcagtcctcaaaaaagaaaagtccaaacaggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccattgggaggagggaagttttaggatcagtcctcaaaaaagaaaagtccaaacaggtat 255

                                                                 
Query: 241 cccttcctttaagtggataacattctagacagagtaagaaccagttacacaaga 294
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 254 cccttcctttaagtggataacattctggacagagtaagaaccagttacacaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 688
Length adjustment: 9
Effective length of query: 285
Effective length of database: 679
Effective search space:   193515
Effective search space used:   193515
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)