Query= MSMg01no232_i03.b1 MSMg01no232_i03.b1 CHROMAT_FILE:
MSMg01no232_i03.b1 PHD_FILE: MSMg01no232_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:01 2005
(310 letters)
>mm_chr11_112764243_112764952
Length = 710
Score = 530 bits (274), Expect = e-155
Identities = 298/306 (97%), Gaps = 4/306 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctgcacacagtagtcaatacttcttgcaaaagaatcctcaataggctacttc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcacacagtagtcaatacttcttgcaaaagaatcctcaataggctacttc 263
Query: 64 agatgcgaagtaggggcattagggtattatgtcttttagatacagttttctaggcctttc 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agatgcaaagtaggggcattagggtattatgtcttttagatacagttttctaggcctttc 323
Query: 124 gtttcttatgccgtgactgtcactatctgctgtgccttacactcttcaatatctacct-t 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 324 gtttcttatgccgtgactgtcactatctgctgtgccttacactcttcaatatctac-tgt 382
Query: 183 cattttccaaacagcatctcactttaacg-tcctcccctcccccacgcaatgattctctg 241
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 383 cattttccaaacagcatttcactttaacgctcc-cccctcccccacgcaatgattctctg 441
Query: 242 gagctggtcatgggaggcattattactccaattttacagataaagaaagtgaggtttggg 301
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 gagccggtcatgggaggcattattactccaattttacaggtaaagaaagtgaggtttggg 501
Query: 302 aaattc 307
||||||
Sbjct: 502 aaattc 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_i03.g1 MSMg01no232_i03.g1 CHROMAT_FILE:
MSMg01no232_i03.g1 PHD_FILE: MSMg01no232_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:01 2005
(280 letters)
>mm_chr11_112919901_112920580
Length = 680
Score = 511 bits (264), Expect = e-149
Identities = 276/280 (98%)
Strand = Plus / Minus
Query: 1 tgtgcctagagcccacacgatgggaagagagaaacagcagctcctgcaagctgctctctg 60
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 344 tgtgcccagagcccacacgatgggcagagagaaacagcagctcctgcaagctgctctctg 285
Query: 61 accacctcacacacctctcgcctgcgtgcacccacccctccccaaagcatagcaatgtat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284 accacctcacacacctctcgcctacgtgcacccacccctccccaaagcatagcaatgtat 225
Query: 121 tctcaaaccccacgtctaccttggacctcagacacgatcctacttggaaatggagtctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tctcaaaccccacgtctaccttggacctcagacacgatcctacttggaaatggagtctgt 165
Query: 181 gccgatgcagagagttaaggatcttgagatgagctcatcctgaagtttgggcgactcccc 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 164 gccgatgcagagagttaaggatcttgagatgagctcatcctgaattttgggcgactcccc 105
Query: 241 tctccaatgaccagtcctgagaagagggcaaaagatgcag 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tctccaatgaccagtcctgagaagagggcaaaagatgcag 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
