BAC Information

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BAC

Clone NameMSMg01-233J15
Chromosome11 (Build37)
Map Location 14,949,168 - 15,002,603
singlet/doubletdoublet
Overlap geneLOC432537
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233J15.T7 (MSMg01no233_j15.b1)MSMg01-233J15.TJ (MSMg01no233_j15.g1)
ACCAG399753AG399754
length696714
length of high quality
(start - end)		651 (46 - 696)158 (430 - 587)
definitionCHROMAT_FILE: MSMg01no233_j15.b1 PHD_FILE: MSMg01no233_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:20 2005CHROMAT_FILE: MSMg01no233_j15.g1 PHD_FILE: MSMg01no233_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(15,002,113 - 15,002,603)(14,949,168 - 14,949,312)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAAGTTTTGTTAGAATTTGAGATTTCCAGGTGTAATGGTTTGA
ATAAGAAATGCCCCTGCTACAGGCACAGGTATTTGAATATTTGGTCCCTA
GTTCTTAGCCCTGTTTAAGAGTTAATGGAACTTTCAGGATGTAAAGCATT
GGTCAAAGTGACATCACTATGTCACTGGTGAGTGAGCTTTGTCAGTTTAT
AGCCTCAGCTGTCTTCTAGTTCCCTGTTTTGTGTTCTTCGTTGCACATGA
GATCACTGAGCTTCATGAACTAGCCACGTGACACCAAGAGTCCCTGTCAT
TGTGAACTCTGAAATCCTAAACCACATCAGATACTTTATTGTGTGATTCA
TTTATAATTATAGTATGCTATTATTGCAACAAAAAGTAATTATTGCAGTA
TGAGTTCTATACTACAGGAATGGATGAGCTCTGTGAAGAGGGAAAAATAG
AATTGTCAGCCACAAAAGATAAGAGACAAGTCCTCACTGTAAATACCAGT
CTGCAGAATTTTCATAGAGTCATAGGGACTACTGAATCCCCTAGATTCAT
ATCGTTGATGTAATAATTTTGTACTAGTCAGTTTATGAAACATAATTGGG
GGTCTATTAAAATATTTTTCTTTATTTTATTTTATGCTTAATTTAT

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCGCAAAATTCTGTTTGGCACTGTTCCCCATTTTTA
ATAGCGTTATTTGGTTTTCTCTATATATTGGATATTAGCCCTCTATCAGA
TGTGAGATTGGTAAAGATCTTTTACCAATCTGCTGGTTGTTGTTTTCTCC
TATTGACAGTGTCCTTTGCTGTACAGAAACTTTGCAATTTTATGAGGTCC
CATTTGTCGACTCTTTGATCTTATAGCAAAAGCCACTGGTGTTCTGTTCA
GGAACTTTTCCCTTGTTCCTTTACGTTCAAGATCCTCCCCCCCTTTCTCT
TCTATTAGTTTCTTTACCCCCCCCCCCCTTTGGAGGACCTTGATCCATTT
GGATCATCACCACCTTTGAACAAAAAACAATATGTGCGTGATGAAGTTCA
GCGTCAGCCCTGTTGTCATGGTGGCAGTGGAGGCCAAGAACCCAACTGAC
CTGCCCAAGCTGGTGGAGGGGCTGAGGAGGCTGGCTAAGTCTGACCCTAT
GGTGCAGTGCATCATTGAGGAGTCATTGCTGGCGCCAGTGAGCTGCATCT
GGAGATCTGCCTTTAGGACCTGTAGGAGGACCATGCCTGTTTTCTTTTCA
AGATATCTGAACCTGTTGTGTCCTACCGGTAGACAGTCAGCGCAGGATTC
TATGGGCTTGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_j15.b1 MSMg01no233_j15.b1 CHROMAT_FILE:
MSMg01no233_j15.b1 PHD_FILE: MSMg01no233_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:20 2005
         (651 letters)



>mm_chr11_15001554_15002604
          Length = 1051

 Score =  849 bits (439), Expect = 0.0
 Identities = 478/491 (97%)
 Strand = Plus / Minus

                                                                        
Query: 161  aagtgacatcactatgtcactggtgagtgagctttgtcagtttatagcctcagctgtctt 220
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1050 aagtgacatcactatgtcactggtgagtgagctttgtcagtttatagcctcaactgtctt 991

                                                                        
Query: 221  ctagttccctgttttgtgttcttcgttgcacatgagatcactgagcttcatgaactagcc 280
            ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 990  ctagttccctgttttgtattcttcattgcagatgagatcactgagcttcatgaactagcc 931

                                                                        
Query: 281  acgtgacaccaagagtccctgtcattgtgaactctgaaatcctaaaccacatcagatact 340
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 930  acgtgacaccaagagtccctgtcattgtgaactctgaaatcctaaaccaaatcagatact 871

                                                                        
Query: 341  ttattgtgtgattcatttataattatagtatgctattattgcaacaaaaagtaattattg 400
            |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 870  ttattgtgtgattcatttataattatagaatgttattattgcaacaaaaagtaattattg 811

                                                                        
Query: 401  cagtatgagttctatactacaggaatggatgagctctgtgaagagggaaaaatagaattg 460
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  cagtatgagttctatagtacaggaatggatgagctctgtgaagagggaaaaatagaattg 751

                                                                        
Query: 461  tcagccacaaaagataagagacaagtcctcactgtaaataccagtctgcagaattttcat 520
            |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 750  tcagtcacaaaagataagagacaagtcctcactataaatatcagtctgcagaattttcat 691

                                                                        
Query: 521  agagtcatagggactactgaatcccctagattcatatcgttgatgtaataattttgtact 580
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  agagtcatagggaccactgaatcccctagattcatatcgttgatgtaataattttgtact 631

                                                                        
Query: 581  agtcagtttatgaaacataattgggggtctattaaaatatttttctttattttattttat 640
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 630  agtcagtttatgaaacataattgggggtttattaaaatatttttctttattttattttat 571

                       
Query: 641  gcttaatttat 651
            |||||||||||
Sbjct: 570  gcttaatttat 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no233_j15.g1 MSMg01no233_j15.g1 CHROMAT_FILE:
MSMg01no233_j15.g1 PHD_FILE: MSMg01no233_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:20 2005
         (158 letters)



>mm_chr11_14948968_14949525
          Length = 558

 Score =  257 bits (133), Expect = 2e-73
 Identities = 142/145 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgtgcgtgatgaagttcagcgtcagccctgttgtcatggtggcagtggaggccaaga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgtgcatgatgaagttcagcgtcagccctgttgtcatggtggcagtggaggccaaga 260

                                                                       
Query: 61  acccaactgacctgcccaagctggtggaggggctgaggaggctggctaagtctgacccta 120
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 acccagctgacctgcccaagctggtggaggggctgaagaggctggctaagtctgacccta 320

                                    
Query: 121 tggtgcagtgcatcattgaggagtc 145
           |||||||||||||||||||||||||
Sbjct: 321 tggtgcagtgcatcattgaggagtc 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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