BAC Information

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BAC

Clone NameMSMg01-233P19
Chromosome11 (Build37)
Map Location 108,393,065 - 108,393,172
singlet/doubletsinglet
Overlap geneCcdc46
Upstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381
Downstream geneOlfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233P19.T7 (MSMg01no233_p19.b1)MSMg01-233P19.TJ (MSMg01no233_p19.g1)
ACCAG400017AG400018
length689703
length of high quality
(start - end)
210 (418 - 627)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no233_p19.b1 PHD_FILE: MSMg01no233_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:49 2005CHROMAT_FILE: MSMg01no233_p19.g1 PHD_FILE: MSMg01no233_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAATCCGCGGAATTCTTTCAT
TACGAAAAAGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCA
GAGTAAGACAATAAATTTGAGGAAGCTTTGAAGTGAGTAAAAAAAGAAGC
AGTCACAAAATATTTAATGTTTAAAAAATTGCTGTTACTTGGGGCTGGAG
AGGTGGTTCAGTGGCTAAGAGTATTAGCTTCTTTTCCCTAGGACCTGGGT
TTTAGTCTCAGCACCCACTTGGTAGCTAACGATTTTGTATAACTTCAGAG
CTGTAATANTCCATGCCCCCTCTGGACTCAGTGGACACTGAATTTTTGTT
TGTCCCGCCACCCCCCCAGGCAAAACATCTGTACAGATAGCATAAAGATA
AAGTTAAAAGAAAAATTAAAACACACAGGTTGCTCATAGTTCATTGAGAT
CCAAGTTGACTAGACGGTGAGTGCATGTTCACAATAGCCGTGTAGTGCTT
CACAATAGCCGTGTAGTGCTTCACAATAGCCGTGTAGTGCTTCGCAATAG
CCGTGTAGTGCTTCACAATAGCCGTGTAGTGCTTCACAATAGCCGAGTAG
TGCTTCACACTGCTTTGCCATTCAGGATCTGTTTTCTGATACTCTATTAC
ATGATTTTTTTTTAGCCCACAAAGCAGCTCAGCTGCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGCT
GAAAAACACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGATGATGCTGTCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCACTGTTGGTGGGACTGCAAGCTTGTACCACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGGATGATC
CCGCCATTTTTTTCCTGCCCACACATCCAGAAGATATTCCAACTAGTAAA
AAAGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCGTAGGCAAATGGTTGGACCTGGAGGGCATTATCCTGAG
GGAGGTAACCCAATCACAAAAGCACTCAAATGATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGTTACAATTT
GCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_p19.b1 MSMg01no233_p19.b1 CHROMAT_FILE:
MSMg01no233_p19.b1 PHD_FILE: MSMg01no233_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:49 2005
         (210 letters)



>mm_chr11_108392865_108393474
          Length = 610

 Score =  201 bits (104), Expect = 2e-56
 Identities = 107/108 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacacacaggttgctcatagttcattgagatccaagttgactagacggtgagtgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacacacaggttgctcatagttcattgagatccaagttgactagacggtgagtgcatg 260

                                                           
Query: 61  ttcacaatagccgtgtagtgcttcacaatagccgtgtagtgcttcaca 108
           |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttcacaatagccgtgtagtgcttcacaatagccgagtagtgcttcaca 308



 Score =  128 bits (66), Expect = 3e-34
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                       
Query: 145 ttcacaatagccgtgtagtgcttcacaatagccgagtagtgcttcacactgctttgccat 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacaatagccgtgtagtgcttcacaatagccgagtagtgcttcacactgctttgccat 320

                 
Query: 205 tcagga 210
           ||||||
Sbjct: 321 tcagga 326



 Score = 78.1 bits (40), Expect = 4e-19
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 128 caatagccgtgtagtgcttcacaatagccgtgtagtgcttcaca 171
           |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 caatagccgtgtagtgcttcacaatagccgagtagtgcttcaca 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)