Query= MSMg01no234_c21.b1 MSMg01no234_c21.b1 CHROMAT_FILE:
MSMg01no234_c21.b1 PHD_FILE: MSMg01no234_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:04 2005
(609 letters)
>mm_chr11_77298705_77299711
Length = 1007
Score = 1104 bits (571), Expect = 0.0
Identities = 596/605 (98%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaatttcttccgcaaaagctcacagctgtttgtttaattgccgcaatgaaaa 64
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcattaatttcttctgcaaaagctcacagctgtttgtttaattgctgcaatgaaaa 264
Query: 65 ggtttccatgatttccaccacccgccctccccacagagagagtagagcctcctggaccca 124
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtttccatgaaacccaacacccgccctccccacagagagagtagagcctcctggaccca 324
Query: 125 gcaggctcagagagaatcatagcagaagtctttagatttaacggctggggctccctgggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaggctcagagagaatcatagcagaagtctttagatttaacggctggggctccctgggc 384
Query: 185 agaagcttccctgcccccacccacgagcagcacccccccgtgcacacgtacactggtacg 244
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 385 agaagcttccctgcccccacccacaagcagcaccccc--gtgcacacgtacactggtacg 442
Query: 245 cacaggttccagaagaaagcatgctcgtcctacctacacccctgaacctgtgcacccttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacaggttccagaagaaagcatgctcgtcctacctacacccctgaacctgtgcacccttg 502
Query: 305 acagcacaggcacaggtgtgtctagctgctctctagccctctaggagttcacttgtgtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acagcacaggcacaggtgtgtctagctgctctctagccctctaggagttcacttgtgtaa 562
Query: 365 cgtgtgcttggtaagggcacactcagtctaaacacccacacgcactagcggggtgttttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cgtgtgcttggtaagggcacactcagtctaaacacccacacgcactagcggggtgttttt 622
Query: 425 caaactctttcagcatggacagaaaccgtttgtcaagtaaagccttaaaaacacttgcca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caaactctttcagcatggacagaaaccgtttgtcaagtaaagccttaaaaacacttgcca 682
Query: 485 aatatacagtaagtctgagcactgagaagggcgggagctccaagagccttggccactggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatatacagtaagtctgagcactgagaagggcgggagctccaagagccttggccactggg 742
Query: 545 cctcctctctctcccctgctgcccacccacctctcctccccaatcctaggaaaaatggat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctcctctctctcccctgctgcccacccacctctcctccccaatcctaggaaaaatggat 802
Query: 605 ggagt 609
|||||
Sbjct: 803 ggagt 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1007
Length adjustment: 10
Effective length of query: 599
Effective length of database: 997
Effective search space: 597203
Effective search space used: 597203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_c21.g1 MSMg01no234_c21.g1 CHROMAT_FILE:
MSMg01no234_c21.g1 PHD_FILE: MSMg01no234_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:04 2005
(294 letters)
>mm_chr11_77383294_77383991
Length = 698
Score = 511 bits (264), Expect = e-149
Identities = 285/294 (96%), Gaps = 4/294 (1%)
Strand = Plus / Minus
Query: 1 caggctaactaatactacaaagcatgaacctgtcttataaaaaa----aataataacaac 56
|||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 368 caggctaactaatactacaaagcatgaacccgtcttataaaaaaaaataataataataac 309
Query: 57 aattaaataagttttttgtttagatgaaatttaggtaataactcgaaagaatttgagatg 116
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 308 aattaaataagttttttgtttagatgaaatttaggtaataactcaaaagaatttgagatg 249
Query: 117 atggaggtgtaatttggttgatagaactcatgaagtcttgggtttgataaccaggtatgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atggaggtgtaatttggttgatagaactcatgaagtcttgggtttgataaccaggtatgg 189
Query: 177 cagaatatctctataatttcattactcaagagaatcaggaattcagggtcatcctgagct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cagaatatctctataatttcattactcaagagaatcaggaattcagggtcatcctgagct 129
Query: 237 gcatggtgatttataatctaaattgagctacatgagattcttataaatgaatga 290
||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 128 gcatggtgatttagaacctaaattgagctacatgagattcttataaatgaatga 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 698
Length adjustment: 9
Effective length of query: 285
Effective length of database: 689
Effective search space: 196365
Effective search space used: 196365
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
