BAC Information

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BAC

Clone NameMSMg01-234N07
Chromosome11 (Build37)
Map Location 66,676,526 - 66,676,744
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc9, Gm879, LOC668323
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234N07.T7 (MSMg01no234_n07.b1)MSMg01-234N07.TJ (MSMg01no234_n07.g1)
ACCAG400596AG400597
length670827
length of high quality
(start - end)
229 (90 - 318)234 (184 - 417)
definitionCHROMAT_FILE: MSMg01no234_n07.b1 PHD_FILE: MSMg01no234_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:56 2005CHROMAT_FILE: MSMg01no234_n07.g1 PHD_FILE: MSMg01no234_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCAGTTCCCACTCCAGCTATTCCTGCCACTTTAGA
AACATGGCACCCCCCCTTCCATCCTTTCTTTGTCCACTCAACACGGCTTG
TTTAGACACATATGTATTACTTACCTTGTTTTATTTTTAACTGGTCCATT
GTCTTAGTCAGGATTTTGTTGCTGTGAAGAAACACCATGACCAAGGCAAC
TCTTATAATGGCAACTCTTATGACTCTTATAACATTTAATTGAGGCTGGC
TTTCAGTTTCAGAGATTCAGTCCATGATCATCATGCCAGGAAGCATGGCA
GCATGCAGGCAGACATGGTGTTTTTTTAGCCCCCCCCCCACCTCTTGATT
AGAAGACAATCAGGAAAGACTGTCTTCCTCACGAAAACAAGAAGATGGTC
TCTTCTGCACTGGGCACAGCTTGAGCATAAGAGCTCAAAGCCCACCCTCA
CAGTGATGCACTTCCTCAAACAAGGCCATGCCTACTCCAAAAGACCACAC
CTCCTAATAGAAGCACTTCCCATGGGCTAAGCATATTGAACCCACCACCT
CCATGTAGTCTCTTACTGCTTTATTTTTCTGACTTTCTTACTTCCTTTGT
TTTCTGAGAATCTGTGACTTATTTATTTGCTAACTCTTCTACCAATGTGA
CTATCTTCTCAAGGTGCACN
NNNTTTCCTTTTTTTCTCCCCTCTACCTCTTATCCTTCTTTATNNNNNNC
CAACTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTACAAGGGTGGTCAAGAC
ATGTCCCGACCCTCAGGTATTTTACAGCGCACCAGAGGAGATAGAGCAAT
GTCAGATGACAGAATTGTAGTACGCTAAATGCTCAGACAAGCAGGGAAAC
TCAGGATCCCTTGGGAGATCAAGGCAAAGACGATGAAACCATTTGGGGGA
AGATGTGGGAATATTTCTCTCATCCATAGGTTGAAAACTTAATCTTCAGT
GCTCTAAGAGGTATAGCCTTTAGGATATATTATGTCAAGAGAGTAGAGCC
CTTACCACCAATGGGATTTTTTTCTCTCACCCCCCACGTCTAGACATAGT
AGAGTAAAGAAGGGACTGCTTCTATGCGAAGACCATGAGACATCATGTCT
GTAAGAAGAGGACCCTTGCCAGACTCTATCTCTGTTGGCACCTTGACCTT
AGATGTTCCAGTATCTAGAACACTGAACTAAATATGACAAATTAGAAGGT
ATTATTTAATCAGGCCAATGAAGATGGGGAAGACAATTCAGAGCTGAGGT
GTGACTCAGGTATCCGTTAGGGTCCAGGAGTTACCCCCAAATACCTCACA
ATACACCAATCCTCTGTCAGAACAGGGGTTTCGTTTTTATTGAAATGCAA
CACCTTTAAAGAACTGAATCATATTTAATGGTTGGTAAGAATCAAGAACT
TTGGGAAACTTGTAAAAGCCTTATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_n07.g1 MSMg01no234_n07.g1 CHROMAT_FILE:
MSMg01no234_n07.g1 PHD_FILE: MSMg01no234_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:56 2005
         (234 letters)



>mm_chr11_66676407_66677040
          Length = 634

 Score =  369 bits (191), Expect = e-107
 Identities = 212/219 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggagatagagcaatgtcagatgacagaattgtagtacgctaaatgctcagacaagca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 338 agaggagatagagcaatgtcagatgacagaattgtagtatgctaaatgctcagacaagca 279

                                                                       
Query: 61  gggaaactcaggatcccttgggagatcaaggcaaagacgatgaaaccatttgggggaaga 120
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 278 gggaaactcaggatcccttgggagatcaaggcaaagatgatgaatccatttgggggaaga 219

                                                                       
Query: 121 tgtgggaatatttctctcatccataggttgaaaacttaatcttcagtgctctaagaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tgtgggaatatttctctcatccataggttgaaaacttaatcttcagtgctctaagaggta 159

                                                  
Query: 181 tagcctttaggatatattatgtcaagagagtagagccct 219
           |||||||||||| | |||| ||||||||||||| |||||
Sbjct: 158 tagcctttaggaaagattaggtcaagagagtagtgccct 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)