Query= MSMg01no235_f09.b1 MSMg01no235_f09.b1 CHROMAT_FILE:
MSMg01no235_f09.b1 PHD_FILE: MSMg01no235_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:38 2005
(504 letters)
>mm_chr11_25055958_25056861
Length = 904
Score = 870 bits (450), Expect = 0.0
Identities = 489/518 (94%), Gaps = 26/518 (5%)
Strand = Plus / Plus
Query: 5 gaattcttccttgttaggagtgtacccagtccattgggaatggtggacacaccaacacac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcttccttgttaggagtgtacccagtccattgggaatggtggacacaccaa----- 249
Query: 65 caaacaagattcttgtggatacaaagagagagagagagagagagagagagagagag---- 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ---acaagattcttgtggatacaaagagagagagagagagagagagagagagagagagag 306
Query: 121 --------------tggtgagaactctgagaatagctaatgagggaggaacttcctgatg 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agagagagagagagtggtgagaactctgagaatagctaatgagggaggaacttcctgatg 366
Query: 167 ctgttcactttcgccagaattgaccatactagcaggaaagctatgaagacctcatcatct 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 367 ctgttcactttcgccagaattgaccatactagcaggaaagctatgaagacctcagcatct 426
Query: 227 tccagctggttctctatccgctaccatgtcctctctgagagctgcccatcgagggctgag 286
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttcagctggttctctatccgctaccatgtcctctctgagagctgcccatcgagggctgag 486
Query: 287 agtgctaagaacacagagaagggcagcctggcaaaggcctgggaggcagaagatgaggaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgctaagaacacagagaagggcagcctggcaaaggcctgggaggcagaagatgaggaa 546
Query: 347 tatgaattaggagataactgtagacacctccgatcgaaatgtaaaatctggcatttatct 406
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 547 tatgaattaggagataactgtagacacatccgatcgaaatgtaaaatctggcatttatct 606
Query: 407 gtttgcagtgctgcagaaaggtgctctcaccaccatggatggaccaggaagcagggtctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtttgcagtgctgcagaaaggtgctctcaccaccatggatggaccaggaagcagggtctt 666
Query: 467 tctgttaagggtaaataaaatgagggtaagactttaag 504
||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tctgttaagggtaaataaaatgagggtaagactttaag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_f09.g1 MSMg01no235_f09.g1 CHROMAT_FILE:
MSMg01no235_f09.g1 PHD_FILE: MSMg01no235_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:38 2005
(341 letters)
>mm_chr11_25114144_25114884
Length = 741
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 1 ttatctgatattttcataattgttcttattgtttttaatttattaatataagaaagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttatctgatattttcataattgttcttattgtttttaatttattaatataagaaagagac 306
Query: 61 tctttattggattaaaaaggtagatgttagggattggccttgtgtactgtacattcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tctttattggattaaaaaggtagatgttagggattggccttgtgtactgtacattcagat 246
Query: 121 gctgaattttatgcaatattgtatggtgggtttcatggtatgttcaagcatctacatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctgaattttatgcaatattgtatggtgggtttcatggtatgttcaagcatctacatctc 186
Query: 181 aatgttatgtaaaatttgtgtttcatcatctgtgattggataataaagtgctgattaccc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 185 aatgttatgtaaaatttgtgtttcatcatctgtgattggataataaagtgctgattactc 126
Query: 241 aacttgtctgtgtaggacaggaaagaagaggagcgacaccagatcccagtgagagggtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aacttgtctgtgtaggacaggaaagaagaggagcgacaccagatcccagtgagagggtcc 66
Query: 301 caggtggggagagaggagg-aaaaaaaaagagaaaaataa 339
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 65 caggtggggagagaggaggaaaaaaaaaagagaaaaataa 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
