BAC Information

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BAC

Clone NameMSMg01-235J12
Chromosome11 (Build37)
Map Location 26,514,579 - 26,514,871
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586
Downstream genePpia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235J12.T7 (MSMg01no235_j12.b1)MSMg01-235J12.TJ (MSMg01no235_j12.g1)
ACCAG401119AG401120
length730727
length of high quality
(start - end)
327 (45 - 371)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no235_j12.b1 PHD_FILE: MSMg01no235_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:58 2005CHROMAT_FILE: MSMg01no235_j12.g1 PHD_FILE: MSMg01no235_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATTTTTCTCAGACTTTTACCACGAAGGGATGTTGAGTTTCATC
AAATGCTTTCTCAGCATCTAATGACATGATCGTGTGTTTTTTATTTCCTT
TGAGTTTATTTATATAGTGGACCATGTCGATGGATTTCCATATATTGAAC
TATCCCTGCATCCTTGGGATGAAGCCTACTTGATGAGGGTAAAAGATTGT
CTTGATGTGTTCTTGGATTCAGACTGTGAGAATTTTATTGAGTTAAATTT
TTTGTATTGATATACATAAAGGAAATTGGTCTGAAGTTCTCTTTCGTTGT
TTGATCTGTGTTTGGTTTAGTCATAAGCATAATTATGGCTTCATAGAATG
AATTGGGTAGTATCCCCCCTGTTTATATTTTGTGGACTTGTTTGAAGGAT
ATTGGTATTAGGTCTTCTTTGAAGACCTGATACAATTCTGGACTATAACC
TGGGCTTTTTTTGATTTGCAAATTTTAATGACTGCTTCTATATCATTAGG
GGTTATGAGAATGTTTACTTTATCTGATCCTGATTTAACTTTGGTACCTG
GTAGTTGTCGACAAAATTGTTCCATTTCAACCAAATTTTCCCTGTTTTGT
CCAACATAGTCTACCCGCTCTTTGATTTTGTTGCCACCACACGGCTTCCG
GTAGCAATAGTCCTGTTTATTCCTTTGTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGGACTCCAATGGGTCTTCC
TTCATGCTGTGAGTCATTGAATAGCTCAGATTAGCATCTTCAATTCTCTA
GTGTGATAGGATGCAAATACCCAAACATCAAAGCAGAAAAATTGTTAACA
GACTAAGAAACCTTAAGTCTTCATGGCATGGTATAGCTATTTAATGTATC
ATTGTTTTTATTAAAGCAATTTAAAAGCAAAATTATATAACTATGGTTTT
GCTAAAAATAAACCACTAAAACATCTACATTCATATTTCTTAAGTAGTCA
ACAAAGATTTCTTTTTGACATCAGCCTATAATAAAAATGAAGCTATAAAA
TGGCCATGTAGTCAGTTACCGCCAGTACATTCTATAAAGCAAACATAAGC
ACACTCATTCTTTCAAAATGGTCATATGCCAATATGAAATGCCTCATTCA
TGACCTCCATATAATATGGTAACCTGCTGACTTCCCAAGCTTGTATATTT
GAAGGAAGAGTTATTGTAGGTATGGAGACATAATAGCTTTCCTTAGCTAA
ATATAGAAGATATTTTCAACGATGGAAATTAGTAAAATATACTTAAAATA
TGCAGGACACTAATCTTGCCCTCATACATTCTATTGGGCACTCTTGCTGG
CAGATTACTAGTAAGCTCAACATTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_j12.g1 MSMg01no235_j12.g1 CHROMAT_FILE:
MSMg01no235_j12.g1 PHD_FILE: MSMg01no235_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:58 2005
         (293 letters)



>mm_chr11_26514379_26515071
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtggactccaatgggtcttccttcatgctgtgagtcattgaatagctcagattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtggactccaatgggtcttccttcatgctgtgagtcattgaatagctcagattagca 260

                                                                       
Query: 61  tcttcaattctctagtgtgataggatgcaaatacccaaacatcaaagcagaaaaattgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcaattctctagtgtgataggatgcaaatacccaaacatcaaagcagaaaaattgtt 320

                                                                       
Query: 121 aacagactaagaaaccttaagtcttcatggcatggtatagctatttaatgtatcattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagactaagaaaccttaagtcttcatggcatggtatagctatttaatgtatcattgtt 380

                                                                       
Query: 181 tttattaaagcaatttaaaagcaaaattatataactatggttttgctaaaaataaaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattaaagcaatttaaaagcaaaattatataactatggttttgctaaaaataaaccac 440

                                                                
Query: 241 taaaacatctacattcatatttcttaagtagtcaacaaagatttctttttgac 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaacatctacattcatatttcttaagtagtcaacaaagatttctttttgac 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)