BAC Information

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BAC

Clone NameMSMg01-235K04
Chromosome11 (Build37)
Map Location 61,087,698 - 61,171,755
singlet/doubletdoublet
Overlap gene4933429E10Rik, 1300013J15Rik
Upstream geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
Downstream geneLOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235K04.T7 (MSMg01no235_k04.b1)MSMg01-235K04.TJ (MSMg01no235_k04.g1)
ACCAG401150AG401151
length735737
length of high quality
(start - end)
317 (45 - 361)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no235_k04.b1 PHD_FILE: MSMg01no235_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:01 2005CHROMAT_FILE: MSMg01no235_k04.g1 PHD_FILE: MSMg01no235_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,087,698 - 61,088,009)(61,171,459 - 61,171,755)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGAACATCTGATGCTACCATCTCTAGCTAACTCAAACTGCATGT
CTAGGCCAGTACCATGATGTATAAACATAAACTGGCCCGTATGGACTCCT
GTGCCCTATGTGTGGGAAGTGGAAGGAGTCTGGGCAGAGCCTCTCTCCAG
CTGAAAGTCAAGAATGTCAGCACCGTCAACATTCTCCGTGATGATTGCCA
ACAGAGAGATGATTCTCACCACACAGAAGGGAGAACATTAACAGAGCAAG
GAATCAGCTAGGGCCTAAACCTATATGGCCTTTTAATATGAGTAAACATT
TGTTTACAGCTTTAAAAACACCCCACTTAACTTGCTGTGCAGCCTTTACC
TTATTGGCTATAATACATCAAGAGCCACCACATAATCTCATTTACCAAAA
AGAAAAGTTTCCATAGCAACCCTCTGATAAGTAATACCAGAAGTCACCCC
AAAGCAGTATAATACTGCTACTGTAAAGGCAATTGCAGACTGATGTGTGA
GTTTGATCCTGGAGCCCACAAGGTAGGAGAGAACTGATTCCTGTAAGCTA
TTGACCTCTACCTACAGCACTCACACACACACACACACACACACACTCAT
ACACACATGAATATTTAAAAACTAAGGTAGTTGCAACTATTTTTAAACTA
GCCCACATCCATGCTTTCATGTGTGTCTTGTTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATGCCCCCTGTACTGGAAACCC
AAATGTACAGTCTGGGACGGGCTTAATGTTGGTATGAAAGTAGGATCAAC
AATAGCAGTAACTGAAGAAGAGTGGTCAAACCTGGAGAGGAGGGAAAGAA
CCCAGAACCCTCCAAAAGTTGCTGGAGTTCACATTCAAATGTGCGTGTCT
GTCTCCACTGATACTTGTTGAAACCTTTTAACCATTTCCAGAGCTCCAGA
AGGACCCCTGATCTCTGATGATACCCTTCTTATTCAGCCTGGATGTTTTT
TTTTTCTTCTGCAGCAGCTGCTGCACCCCACAATTATCAGCAATTAGCTT
TCAAGCATGAGCATGTTGCCCACAGAAGACTGCTCAGGGATAGGGGTGTG
CACCCCAATAATATGCACAACAAATGTCAATTTTGTGTATAGATTTATGT
CTCCTCCCCAAGATATCCCATAATGTCTATACAAATATTCCAACCTCTCA
ATATTGTCCCAGGCAATGGTGACTGGAGTCATGTTGGAGTCTCAGATCTG
TCACACGGCCTGGTTTTTAGAGTTTTAGAATATATTTGGCACATACATTG
ATGTTAAAAATCTTGTCAGTGAGCTGTCTTAAAATCATGGCATTGGGCTG
ATGGCTGANGAGATGAACAATCCACGCTGTCCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_k04.b1 MSMg01no235_k04.b1 CHROMAT_FILE:
MSMg01no235_k04.b1 PHD_FILE: MSMg01no235_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:01 2005
         (317 letters)



>mm_chr11_61087495_61088211
          Length = 717

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgaacatctgatgctaccatctctagctaactcaaactgcatgtctaggcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgaacatctgatgctaccatctctagctaactcaaactgcatgtctaggcc 263

                                                                       
Query: 64  agtaccatgatgtataaacataaactggcccgtatggactcctgtgccctatgtgtggga 123
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 agtaccatgatgtataaacataaactggccagtatggactcctgtgccctatgtgtggga 323

                                                                       
Query: 124 agtggaaggagtctgggcagagcctctctccagctgaaagtcaagaatgtcagcaccgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtggaaggagtctgggcagagcctctctccagctgaaagtcaagaatgtcagcaccgtc 383

                                                                       
Query: 184 aacattctccgtgatgattgccaacagagagatgattctcaccacacagaagggagaaca 243
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| 
Sbjct: 384 aacattctccgtgatgattgccaacagagagatgattctcaccgcacataagggagaacg 443

                                                                       
Query: 244 ttaacagagcaaggaatcagctagggcctaaacctatatggccttttaatatgagtaaac 303
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ttaaaagagcaaggaatcagctagggcctaaacctatatggcctttcaatatgagtaaac 503

                       
Query: 304 atttgtttacag 315
           ||||||||||||
Sbjct: 504 atttgtttacag 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no235_k04.g1 MSMg01no235_k04.g1 CHROMAT_FILE:
MSMg01no235_k04.g1 PHD_FILE: MSMg01no235_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:01 2005
         (297 letters)



>mm_chr11_61171259_61171955
          Length = 697

 Score =  536 bits (277), Expect = e-157
 Identities = 292/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgccccctgtactggaaacccaaatgtacagtctgggacgggcttaatgttggtatg 60
           |||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||
Sbjct: 497 caatgccccctgtactggaaacccaaatgtgcaggctgggacaggcttactgttggtatg 438

                                                                       
Query: 61  aaagtaggatcaacaatagcagtaactgaagaagagtggtcaaacctggagaggagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaagtaggatcaacaatagcagtaactgaagaagagtggtcaaacctggagaggagggaa 378

                                                                       
Query: 121 agaacccagaaccctccaaaagttgctggagttcacattcaaatgtgcgtgtctgtctcc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 agaacccagaaccctccaaaagttgctggagttcacattcagatgtgcgtgtctgtctcc 318

                                                                       
Query: 181 actgatacttgttgaaaccttttaaccatttccagagctccagaaggacccctgatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actgatacttgttgaaaccttttaaccatttccagagctccagaaggacccctgatctct 258

                                                                    
Query: 241 gatgatacccttcttattcagcctggatgttttttttttcttctgcagcagctgctg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gatgatacccttcttattcagcctggatgttttttttttcttctgcagcagctgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)