Query= MSMg01no235_l05.b1 MSMg01no235_l05.b1 CHROMAT_FILE:
MSMg01no235_l05.b1 PHD_FILE: MSMg01no235_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:05 2005
(641 letters)
>mm_chr11_8845803_8846843
Length = 1041
Score = 1104 bits (571), Expect = 0.0
Identities = 621/639 (97%), Gaps = 4/639 (0%)
Strand = Plus / Plus
Query: 5 gaattcctttgctagaggcaat--gaggaccttaaaaggctaagtacagaggagacttcc 62
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgctagagg--atacgaggaccttaaaaggctaagtacagaggagacttcc 262
Query: 63 taaagtggtatgcaggatttcccgtgtcttccactatcagccacatgccaagccatggct 122
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taaagtggtgtgcaggattccccgtgtcttccactatcagccacatgccaagccatggct 322
Query: 123 tcaccatgtaacaccacatgcaggaggcaagaagggccatggcacggcaggtctgcaact 182
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 323 tcaccatgtaacaccacatgcaggaggcaagaagggccatggtagggcaggtctgcagct 382
Query: 183 ttctgaaaaggaaccacacagcctatcacctgtgtgtgtgtgaatttgtctgtggatatg 242
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 383 ttctgaaaaggaaccacacatcctatcacccgcgtgtgtgtgaatttgtctgtggatatg 442
Query: 243 ggtactgtagctgatgtctaacgtttcagttacttgcagtcaaccaaggtctgaaatatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggtactgtagctgatgtctaacgtttcagttacttgcagtcaaccaaggtctgaaatatt 502
Query: 303 aaatggaaaaccccagaaataaactgatcataaatgtccagttatgtcattcttaggaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaatggaaaaccccagaaataaactgatcataaatgtccagttatgtcattcttaggaga 562
Query: 363 gtgtaaaatattgtgccaaatacaaacttgcttcccctagaattcgccccctgctcagtc 422
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgtaaactattgtgccaaatacaaacttgcttcccctagaattcgccccctgctcagtc 622
Query: 423 atttataacctagccctttgaagggggaatccagaaccttctgtgtccttgcccatcctg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atttataacctagccctttgaagggggaatccagaaccttctgtgtccttgcccatcctg 682
Query: 483 gcagctgagctcaaggccgacatttggtccatggagttatgatatgagtactctggtagc 542
||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 683 gcagctgagctcaagtcctacatttggtccatggagctataatatgagtactctggtagc 742
Query: 543 cttggtgatgacaagctgatgggtttgattctctgtaatcctccatggtcccacacttgc 602
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 743 cttggtgatgacaagctgatgggtttgattctctgtaatcctccacggtcccacacttgc 802
Query: 603 atatcctccagtcttgtaatccccagaagtctcccaagt 641
|||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atatcctccagtcttgtaatccccagaagtctcccaagt 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_l05.g1 MSMg01no235_l05.g1 CHROMAT_FILE:
MSMg01no235_l05.g1 PHD_FILE: MSMg01no235_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:06 2005
(536 letters)
>mm_chr11_8887084_8888018
Length = 935
Score = 975 bits (504), Expect = 0.0
Identities = 528/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 1 ttcaggagatgctatttgcacttaaatatccatctatcctttgcattgtatatagtttca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 735 ttcaggagatgctatttgcacttaaatatccatctatcctttgcattgtataca-tttca 677
Query: 61 aataccttaacccttttgtgcagtaagaaggatccccgaagttatctaactccaaagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aataccttaacccttttgtgcagtaagaaggatccccgaagttatctaactccaaagtag 617
Query: 121 tgtattgaatctgagcacagaatctgtggtttccaagaatgctttcaaaagacacggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtattgaatctgagcacagaatctgtggtttccaagaatgctttcaaaagacacggctc 557
Query: 181 ttgttccaagcttagaaaagaccaatgggagtagggtaactgttttcattttgtgtcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttgttccaagcttagaaaagaccaatgggagtagggtaactgttttcattttgtgtcttc 497
Query: 241 cagaagattctcttttgtttcattccagtggggtttctatccttacatactaattgcatg 300
|||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 496 cagaagattctcttggggctcattccagcggggtttctatccttacatactaattgcatg 437
Query: 301 ccaagaaatgaagccatcccttctttccctcatttcttcccctaacaagagcatctagga 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caaagaaatgaagccatcccttctttccctcatttcttcccctaacaagagcatctagga 377
Query: 361 tcccgccaggcctttgctggctcctcagtgaattgctgaggtatgggcttttcaagggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcccgccaggcctttgctggctcctcagtgaattgctgaggtatgggcttttcaagggat 317
Query: 421 tgttttttagcagccactgcattaatcacatccagaatgtttgtgcctgtagtagtctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgttttttagcagccactgcattaatcacatccagaatgtttgtgcctgtagtagtctct 257
Query: 481 agggtgtctgtcacctggccttctctagctggtttgatttcaagggttctcaacat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agggtgtctgtcacctggccttctctagctggtttgatttcaagggttctcaacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
