BAC Information

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BAC

Clone NameMSMg01-235L18
Chromosome11 (Build37)
Map Location 61,979,632 - 61,979,946
singlet/doubletsinglet
Overlap geneSpecc1
Upstream geneUsp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235L18.T7 (MSMg01no235_l18.b1)MSMg01-235L18.TJ (MSMg01no235_l18.g1)
ACCAG401216AG401217
length724730
length of high quality
(start - end)		318 (46 - 363)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no235_l18.b1 PHD_FILE: MSMg01no235_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:08 2005CHROMAT_FILE: MSMg01no235_l18.g1 PHD_FILE: MSMg01no235_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCAGATCTCTGCAGAGCCCTCTGTTCATCGCCCCCTAAGCAG
CACAAGGCATAATTGTCTCCATGCACCTTGGCTGTGCTCCTAGGGCTTTG
CCGTGTCCTGGGCTCTGGTGGACACTGGCAATTCAGTCCAGGTTACGGCA
AAGTTAGCAAATGTGAAGTCTGCTAAGACGACTTGACTTAAGAAGCTGAT
TCTTTCCAGAGCCTCTGGGTAAGGTCCTGCCCCCAACATGTGGAAACAGA
AACAGAGAAAGTTGCTAAGCAATGCTATTTACACCACTCCATCTACAACC
AGGCCACATACAAACTTCACAGCTCTTTCTGCAGACTTGAATGTTAGCTT
CTGCTAAACTAGATGGGAAAGCAATGGGTCTTTTCTTGTATTCTTGTCAT
TCTTCTATACTCTACTTCTTTTTCGGCCTGCAGACTCTTGACATCTTGAG
GTGCATAACTGTCAAGAGTACACTTTCGGCTGGGGCTCTCCATGCTGCCC
ACATATCTGAATTGCCAGAATTACCTATCTTAGCCCTTCCACGTTGCTAC
AAAATACCACAGATCAGATGGTTTACAGACAATAGGAAGTTACTTTTCAT
AGTTAAGGGTTGGGAAATCAAAGATCAAGGCAGATCTGTGATGAGGAAGG
CCTGTTCCTGTTAATAGGTGACAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCCCAGTTTGGGTCTTGTG
TTAGCACATCCTACAGTTTACTTTCCTCTTGTTGATCCACTTGTGTATTG
TTACCTGTCTTATTGTATGCAGTACATACCTCAGTAGGTTTCTGAAGAAG
GCATGAACTATGCTTTTGCGGCTTTGAATGTCTGAAAAAGGTTTTTCTGC
TCTCACGCTTGGTTAAAAGGTGTTGAGGGCGGCCAGCGGCCCACATGTCT
GAGTTCTAGCCTGGGAGGCATCTTGTAATCTGGAAGAAAAGAGGGAACTA
GGCCGCACGAGAATTTATGTAACCCCCACCTCCACTCTGATCAAGGTTCA
ATTTTACTATTTGGAGACACGCCGTTATGAAGAAGGGGGAGGGGCCCATT
CCCGCCAAATCATCCTTGGAGTCCAGTTTCAGGTGACCATGTGTTGGCTC
TGGAACAGCTAGGCGGCAGGTAGTAGCAGTGGGAGTGGCAGAACGATAGG
GTGGCAGGCTTCATCCCCATGCTCTCTTAGTGCTAACAGTCAAACCTGAT
CAGCCAGATTTCAGGCTGGGGGGTGGGGGTGTCCATCCTTCCCTTCCCTT
CTTCCATTCTCTTTATTCTTTTTTTTCTTTTATCTCTCCTCCTCTCACTT
CTCTCTTACTTCTAATTTCATTCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_l18.b1 MSMg01no235_l18.b1 CHROMAT_FILE:
MSMg01no235_l18.b1 PHD_FILE: MSMg01no235_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:08 2005
         (318 letters)



>mm_chr11_61979429_61980146
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgcagatctctgcagagccctctgttcatcgccccctaagcagcacaaggc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgcagatctctgcagagccctctgttcatcgccccctaagcagcacaaggc 263

                                                                       
Query: 64  ataattgtctccatgcaccttggctgtgctcctagggctttgccgtgtcctgggctctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataattgtctccatgcaccttggctgtgctcctagggctttgccgtgtcctgggctctgg 323

                                                                       
Query: 124 tggacactggcaattcagtccaggttacggcaaagttagcaaatgtgaagtctgctaaga 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 tggacactggcaattcagtccaggttacggcaaagttagcaagtgtgaagtctgctaaga 383

                                                                       
Query: 184 cgacttgacttaagaagctgattctttccagagcctctgggtaaggtcctgcccccaaca 243
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgacttgacttaagaaactgattctttccagagcctctgggtaaggtcctgcccccaaca 443

                                                                       
Query: 244 tgtggaaacagaaacagagaaagttgctaagcaatgctatttacaccactccatctacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtggaaacagaaacagagaaagttgctaagcaatgctatttacaccactccatctacaa 503

                          
Query: 304 ccaggccacatacaa 318
           |||||||||||||||
Sbjct: 504 ccaggccacatacaa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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