Query= MSMg01no235_o06.b1 MSMg01no235_o06.b1 CHROMAT_FILE:
MSMg01no235_o06.b1 PHD_FILE: MSMg01no235_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:19 2005
(668 letters)
>mm_chr11_57928392_57929459
Length = 1068
Score = 1261 bits (652), Expect = 0.0
Identities = 661/664 (99%)
Strand = Plus / Minus
Query: 5 gaattcacttttccttagagaaataatatccagtaattaacagaactcagcctctgtaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattcacttttccttagagaaataatatccagtaattaacagaactcagcctctgtaga 619
Query: 65 tagactaacaaataacattcctactgtagaaagcagaagaaaactcaggcctcacacact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagactaacaaataacattcctactgtagaaagcagaagaaaactcaggcctcacacact 559
Query: 125 caagagaccccacacctggaagctgtcatctcagagaccctcacactcaggggcctcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caagagaccccacacctggaagctgtcatctcagagaccctcacactcaggggcctcaca 499
Query: 185 ctgcgccattacctctttcatcctgaagaaagccatccccgtcagcagagagtctgagcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgcgccattacctctttcatcctgaagaaagccatccccgtcagcagagagtctgagcc 439
Query: 245 tgcttgatgctgccttccgatcctctgcagatccaactgatcagccacctcctgaaggcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgcttgatgctgccttccgatcctctgcagatccaactgatcagccacctcctgaaggcc 379
Query: 305 tccctaagggacagaaaacaagggtgtcacataccaatactattctcctggactcagcta 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378 tccctaagggacagaaaacaagggtgtcacataccaacactattctcctggactcagcta 319
Query: 365 agtgtactcatgaacatttagcagtgggacaggccattcatctaacaggcttcagtagcc 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agtgtactcatgaacgtttagcagtgggacaggccattcatctaacaggcttcagtagcc 259
Query: 425 atttttcagaccttcactcttattcttcccaaacagtaccctgctgcatgctctgtgtgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atttttcagaccttcactcttattcttcccaaacagtaccctgctgcatgctctgtgtgc 199
Query: 485 atgcagagaagagagacaaccttcacgagtcagctctatcatgttgcagatcaaactcgg 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 198 atgcagagaagagagacaaccttcacgagtcagctctatcatgtcgcagatcaaactcgg 139
Query: 545 gtccattaaggttagcagcccacatctttacccactgagccacctcacaggacaacttga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtccattaaggttagcagcccacatctttacccactgagccacctcacaggacaacttga 79
Query: 605 actttttagaattaaaaatctcacaatagtatcaaccaaccagagctcccagggactaaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 actttttagaattaaaaatctcacaatagtatcaaccaaccagagctcccagggactaaa 19
Query: 665 ccac 668
||||
Sbjct: 18 ccac 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_o06.g1 MSMg01no235_o06.g1 CHROMAT_FILE:
MSMg01no235_o06.g1 PHD_FILE: MSMg01no235_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:19 2005
(639 letters)
>mm_chr11_57894674_57895712
Length = 1039
Score = 1191 bits (616), Expect = 0.0
Identities = 634/640 (99%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 1 acaggtaggtaggtgatccagcattagccaatgggtgtatttaatgatgtcagaaccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acaggtaggtaggtgatccagcattagccaatgggtgtatttaatgatgtcagaaccctg 259
Query: 61 ggatatctatactctcatgtccaccgaatcgctgcttacaattgctgagaaacggagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 ggatatctatactctcatgtccaccgaatcgctgcttacaattgctgagaaacggtgtag 319
Query: 121 atgtcaatatagtgttgcatacctggaatcccagctacgtgaaagacatttggatattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtcaatatagtgttgcatacctggaatcccagctacgtgaaagacatttggatattta 379
Query: 181 gcaatatctgcctcaaaataaagaataattaaagg-ggggggctggagagatagctcagt 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 gcaatatctgcctcaaaataaagaataattaaaggaggggggctggagagatagctcagt 439
Query: 240 ggttagagtgcttgtggcacaatcatatgaagcctagagttttgatcctggaacccatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggttagagtgcttgtggcacaatcatatgaagcctagagttttgatcctggaacccatat 499
Query: 300 aatgaaccaggtatcccacaaaagtcctgtaactccagcacttgtgtaggagttcatgcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatgaaccaggtatcccacaaaagtcctgtaactccagcacttgtgtaggagttcatgcc 559
Query: 360 ctggggcacaggagtgcagacacacttatatacatacgtcatacacataggtgagtacat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggggcacaggagtgcagacacacttatatacatacgtcatacacataggtgagtacat 619
Query: 420 ctttttgacaatttagagtatttagctgctgagcagatgaacactcaagatgacacacag 479
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 620 ctttttgacaatttagagtatttagctgctgagcagataaacactcaggatgacacacag 679
Query: 480 aaaccaaagcttctcttcccaggtggttcccctgatgaatggccagatggcagctgttgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaccaaagcttctcttcccaggtggttcccctgatgaatggccagatggcagctgttgc 739
Query: 540 agtcatatggctgtggacttgtcctggggccacacagtcacacccacacagggccttctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtcatatggctgtggacttgtcctggggccacacagtcacacccacacagggccttctg 799
Query: 600 ccgggtttagataatgcagtgtagacttttgaacacaggg 639
|||||||||| ||||||||||||||||| |||||||||||
Sbjct: 800 ccgggtttaggtaatgcagtgtagacttctgaacacaggg 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
