BAC Information

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BAC

Clone NameMSMg01-235O23
Chromosome11 (Build37)
Map Location 16,085,127 - 16,085,489
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235O23.T7 (MSMg01no235_o23.b1)MSMg01-235O23.TJ (MSMg01no235_o23.g1)
ACCAG401346AG401347
length748745
length of high quality
(start - end)
365 (384 - 748)302 (437 - 738)
definitionCHROMAT_FILE: MSMg01no235_o23.b1 PHD_FILE: MSMg01no235_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:22 2005CHROMAT_FILE: MSMg01no235_o23.g1 PHD_FILE: MSMg01no235_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCATACCTCCATAGACAATGTTGAAAGTAAATGCTGGATTGAT
CACGACATTCAACTAAGATAATACCTGTGCATATTATGTGACCACATACT
AGACATCAGAAGAACTGTCAATAATATAAAAAAGATAGGAAAACAATTAC
TCTGAGGCCATAATTAATAACATAGTGAAACATCTCATAAATCTCACTGG
ATGCCAGTGCTCAGGTTTTAGATCAAAAGAATATTGGAAAGGAAATTTAA
ATATAACCAAATAAAATAACACATGTACATTTTCTCTAGAAGGCTTGTGA
CAATCATAGAAGTATCAGAAGAAATATACCAAAAGAAGTAAGTGATTTGT
TAAAGTCACATGAGAAAATATCACTGCTGGAATATTAATTAGAAAATGTG
TAATAAAGTAGCTGTCAATGAAAAATATCACCGTTATAGCAATGCAGAGG
ATATTAATAACTGGATTATGGCGCTCAGAAAGTACAAAGAATAGCCAGTG
GAGATACTAGCAACATAAAACCAAACCACTAAAAAATAAAAATCACAAAA
TGAGAAAGTTTACTGAAAAATAATTAAAATTTTATGAAGAATAAAATGAA
TTTACAATCTCAAAAGGCAAAAAAGGACAAAGAANACAAGCACCAGAATA
GTAACAAAGTGGCATGAATTAATACATATTTCTCAATAATTATTTTGA
ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACCACAAAATTCTTTTTAATCAGTGAACAATGTGAGGC
AGGATCAGGTTTATGTTTCTACCAAAGGGACAAGCAAAAGTAATTAAATG
ATGTACTTATCAAGTTCTAATGATAGGGAACCAAAACCATGCAATGCAAA
TTGACCACTGCATGTAATTAAAACTAATTTTATCTTATTGCTCAATGCTG
TCACTGTATTTCTCTGATTATATGTCTACAACATCTCAAAACAGTAAATG
TACATTATGAAGTAGAAATTTTTCTTGCAATTTTAATTAACATATATATA
CATATATGTGNNGTTATTTCCCCCCCCCCCCACCATATATATATACATAT
ATATATATATATCTTATTTCCACACAAAAAAAAAAATTTTTAAATGATCG
TGTTTTTCTTTCTCATGTAGTATTAGGCATTAACATTTCTTTAAAAAACA
ATTTTATTAGATATTTTCTTCATTTGCATTTCAAATGATATCCCGAAACT
CCCCTATACACTCCCCTGCCCTGCTCCACAACCCACCCACTCCTGCTTTC
TGGCCCTGGCATTATGCTATACTGGAGTATTTAATCTTTGTAAGACCAAG
GACCTCTCCTCCTAGTGATGGCCAACTAGGCTCTATTCTGCTACATATGC
AGCTAGAGACACGAGCTCAGGGGGTACTGGTTTGTTCATATTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_o23.b1 MSMg01no235_o23.b1 CHROMAT_FILE:
MSMg01no235_o23.b1 PHD_FILE: MSMg01no235_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:22 2005
         (365 letters)



>mm_chr11_16084927_16085689
          Length = 763

 Score =  630 bits (326), Expect = 0.0
 Identities = 355/365 (97%), Gaps = 2/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagtaagtgatttgttaaagtcacatgagaaaatatcactgctggaatattaattaga 60
           |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 563 agaagtaagtgatttgttaaaggcacatcagaaaatatcattgctggaatattaattaga 504

                                                                       
Query: 61  aaatgtgtaataaagtagctgtcaatgaaaaatatcaccgttatagcaatgcagaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaatgtgtaataaagtagctgtcaatgaaaaatatcaccgttatagcaatgcagaggata 444

                                                                       
Query: 121 ttaataactggattatggcgctcagaaagtacaaagaatagccagtggagatactagcaa 180
           ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct: 443 ttaataactggattatggcactcagaaagtacaaagaatagtcagtggagatactagcca 384

                                                                       
Query: 181 cataaaaccaaaccactaaaaaataaaaatcacaaaatgagaaagtttactgaaaaataa 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 383 cataaaaccaaaccactaaaaa-taaaaatcacaaaatgagaaagtttactgaaaaataa 325

                                                                       
Query: 241 ttaaaattttatgaagaataaaatgaatttacaatctcaaaaggcaaaaaaggacaaaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 ttaaaattttatgaagaataaaatgaatttacaatctcaaaaggcaaaaa-ggacaaaga 266

                                                                       
Query: 301 anacaagcaccagaatagtaacaaagtggcatgaattaatacatatttctcaataattat 360
           | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaagcaccagaaaagtaacaaagtggcatgaattaatacatatttctcaataattat 206

                
Query: 361 tttga 365
           |||||
Sbjct: 205 tttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 763
Length adjustment: 9
Effective length of query: 356
Effective length of database: 754
Effective search space:   268424
Effective search space used:   268424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)