Query= MSMg01no235_p23.b1 MSMg01no235_p23.b1 CHROMAT_FILE:
MSMg01no235_p23.b1 PHD_FILE: MSMg01no235_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:27 2005
(668 letters)
>mm_chr11_21020233_21021303
Length = 1071
Score = 1249 bits (646), Expect = 0.0
Identities = 661/668 (98%), Gaps = 5/668 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaactacaaatcaagtaactttttttttcagagaaggtagtttacaatacaga 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattccaaactacaaatgaagtaactttttttttcagagaaggtagtttacaatacaga 812
Query: 65 gaagccattactaaaaaatgacaattactgctactctcagcaaacgatgaaagtttaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaagccattactaaaaaatgacaattactgctactctcagcaaacgatgaaagtttaatc 752
Query: 125 ctgtag----tttccttctttgtccttgcaaagttctgaggaaatgcaggtgatcttcct 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctgtagtttctttccttctttgtccttgcaaagttctgaggaaatgcaggtgatcttcct 692
Query: 181 ctggccaaatcatactgtgttctccagaactttataacagtaatttagagatactgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ctggccaaatcatactgtgttctccagaactttataacagtaatttagagatactgtgtg 632
Query: 241 tgaaaggctaagaacctttttttgttttgttttgtttttaaaacaaagcccccttcatta 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgaaaggctaagaacc-ttttttgttttgttttgtttttaaaacaaagcccccttcatta 573
Query: 301 ggaaaataaatgcacatatctgtgctgttcctacaaatttcctttttcttccatctgcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggaaaataaatgcacatatctgtgctgttcctacaaatttcctttttcttccatctgcta 513
Query: 361 attgttcattatcacataacaaatatcccaaataactaaattatgatcaattttccaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attgttcattatcacataacaaatatcccaaataactaaattatgatcaattttccaact 453
Query: 421 tgtgtcttacagatcttttaatgtacaataaattacatcttcatagactagaaaactgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtgtcttacagatcttttaatgtacaataaattacatcttcatagactagaaaactgga 393
Query: 481 gaaaaatcatcatatataccaatatctagatcagacctagttttctttgaatttcctaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaaaaatcatcatatataccaatatctagatcagacctagttttctttgaatttcctaca 333
Query: 541 aaaacaattttttttcagatatattttttcttttggtgaaaacagaaccctgatgggaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaacaattttttttcagatatattttttcttttggtgaaaacagaaccctgatgggaaa 273
Query: 601 caattattgttactttttggtggaaagcttccctgcggttaaaaatcgattagatataac 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 272 caattattgttactttttggtggaaagcttccctgtggttaaaaatcgattagatataac 213
Query: 661 actattca 668
||||||||
Sbjct: 212 actattca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1071
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1061
Effective search space: 698138
Effective search space used: 698138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_p23.g1 MSMg01no235_p23.g1 CHROMAT_FILE:
MSMg01no235_p23.g1 PHD_FILE: MSMg01no235_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:27 2005
(629 letters)
>mm_chr11_20921206_20922234
Length = 1029
Score = 1108 bits (573), Expect = 0.0
Identities = 615/629 (97%)
Strand = Plus / Plus
Query: 1 atttagacaagatatcacgtctttcataccaggctgcaaaggtggtaatgcggtttagca 60
|||||||||||||||||| |||||||||| ||||||||||||||| |||| | |||||||
Sbjct: 201 atttagacaagatatcacatctttcatacaaggctgcaaaggtgggaatgtgttttagca 260
Query: 61 tcgctgttccccaaatacagtactgcccttgtctccatgctccgagatggcagcgagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgctgttccccaaatacagtactgcccttgtctccatgctccgagatggcagcgagtaa 320
Query: 121 gtctacaattctaggcaccagaagaagggagggatttcaaaggggtaagagttacacacc 180
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 321 gtctacaattctaggcaccagaaggagggagggattacaaaggggtaagagttacacacc 380
Query: 181 aactgtcatttaaggaaagttccagaaattgacagatctaagttgagcaaccctaatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgtcatttaaggaaagttccagaaattgacagatctaagttgagcaaccctaatctc 440
Query: 241 gaattccgaaaagttccaaatctagaaataatttaaacactgaaatgataccacttctgg 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gaattctgaaaagttccaaatctagaaataatttaaacactgaaatgataccacaactgg 500
Query: 301 aaaaccccacatcatgaaacattactttatgctccaagttattacagacactctacaaaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaccccacatcgtgaaacattactttatgctccaagttattacagacactctacaaaa 560
Query: 361 ctgccttgggcaaggtttatctgaaaaaaggatgaattttgtgtttagactcatgcccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgccttgggcaaggtttatctgaaaaaaggatgaattttgtgtttagactcatgcccaa 620
Query: 421 ttcacaaaaacatatcatagttttatatatttattgctacagagaaaggaaacaaatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcacaaaaacatatcatagttttatatatttattgctacagagaaaggaaacaaatact 680
Query: 481 aagggatcaatctctgtgtactgggctttcactttcaagctatgcaagaccaaaccattt 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 aaggggtcaatctctgtgtactgggctttcactttcaagctatgcaagaccaaacaattt 740
Query: 541 ccttaaaaattttacagtttttttaaatatgggttttttgttgttgttgtctttttctta 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 ccttaaaaattttacagtttttttaaatatggtttttttgttgttgttgtctttttctta 800
Query: 601 gggttgtgtgtgtgtgtgtgtgtgtgtgt 629
|||||||||||||||||||||||||||||
Sbjct: 801 gggttgtgtgtgtgtgtgtgtgtgtgtgt 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
