BAC Information

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BAC

Clone NameMSMg01-236D06
Chromosome11 (Build37)
Map Location 25,750,700 - 25,750,990
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236D06.T7 (MSMg01no236_d06.b1)MSMg01-236D06.TJ (MSMg01no236_d06.g1)
ACCAG401531AG401532
length812767
length of high quality
(start - end)
49 (131 - 179)291 (128 - 418)
definitionCHROMAT_FILE: MSMg01no236_d06.b1 PHD_FILE: MSMg01no236_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:43 2005CHROMAT_FILE: MSMg01no236_d06.g1 PHD_FILE: MSMg01no236_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTTCTCTTTCTCTTTTTTTTAATACCTTCTTCAAAACACCCCCGGG
CCCCCTCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGATATTGCCTGTGATTTTAAGTTCTTTTAAACCT
GTGTCCTGGTATTCATCTTCATAATTTTCACCACTGAACATTTTCCTAGA
ACTGGTGGGTTTACTGGGGGTGACACTGCCTTGAAGTGTGGTAGGTTGTC
TATGATTGAGATGGAATGAAGTTATATTGTCAGAGGAGTGCTGGATCCAT
GTGCAGGATGTGTGTCTAAGCCTGGAGTTTCATGGTAGATCTGAAAGTTT
TGTATGTTGAACAAATGGGTGGAATGTGGATGCTCATAACTAGACCATTG
CAAAGGATGTGAGGATACGGTTGGGTGAAGGCTTGAATGTCTAGGCAGTG
TTTTTCAGCTTAGGCCAGGGAACATGGATATGGGATCTGAGATGAGTTCG
GCGAACTGTGTGTGTATGTGTGTCCCATACCCTCTCCTTTTTTTATTTTT
TCTCTATACAAAAAATCCCCCTTTCCCAATTTTTTTTCTCTTCCCCCATT
CCCACTTTTTTTTTTTTTTTTTACCTCTAATACATCAACCAAATTAATTA
TATTTTACCCCTCCTCTCTTTCCTTTTTTTTTTATCCTTCCTTTCCTCCC
CTCTTTTTTTTATTTTCTCCCAGTTTTTCTCCTCTTATTTTCTTTACTCC
CCTCCCACTTTTTTTTATATTTAACATCCCTATTTTCCCTCTACTTTTTT
TCCCTCTTTTTN
CCCCTTCCTCTCTTTTCCTTACTAACCNACCACCTATCCTTATCCCCCCC
TTTCTATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTTCTGCAGGGCTGTAGATT
GAACCAAGACCTCATTCTTATTATTCCCCCACTCTGACTCTGAGCCATTT
CCCCAGGCACTTCTGTGAGGAAGAATTTTTGTAAATGTTTGAAATTAACC
AAAATTCAATTATCATACCATCAAATCCGTTTCATTTTTCTACATCCTCT
TTGCTTTTAATACTGAAATGGTTTTCCTATACTTCTGCCTATAATGGTAA
CATAAATTCCATAGAGATAGCTCTTATTGGCTCTTTTTTTTAGATTTAAC
TTTTTAATTGATCATAAATATATGTCCATCGCCCCCGCCAAAAGTAGATA
ATTAAATTTAATTATTTGGGACAATTTTTGCATTAATTATCCATTTTATA
TTAATTATCCATAAAATTGATACCTTTAATGAGGCATTTATATGACGTTA
AATTCTATACTTAAATGCTATTATACCTTGCCTACTTAATTTTATAACAT
CTTCATTTTTATTATAATGTTATGCGCTTTCTATAACTTTACCATATCAC
CTTTTCTTTCTCAAAAAAATACCCTTCTATGCTATAATTTTTTCATGAAA
ATTTATATTCTATTTTGAGATATTTATTGTATAGCCACGAAGGTGGGTGT
GAAGATATACCACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_d06.g1 MSMg01no236_d06.g1 CHROMAT_FILE:
MSMg01no236_d06.g1 PHD_FILE: MSMg01no236_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:43 2005
         (291 letters)



>mm_chr11_25750500_25751190
          Length = 691

 Score =  501 bits (259), Expect = e-146
 Identities = 283/295 (95%), Gaps = 8/295 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcttctgcagggctgtagattgaaccaagacctcattcttattattccccca----ct 56
           ||||||||||||||||||||||||||||||||||||||||||||||  |    |    ||
Sbjct: 201 aatcttctgcagggctgtagattgaaccaagacctcattcttattaagc----aaggact 256

                                                                       
Query: 57  ctgactctgagccatttccccaggcacttctgtgaggaagaatttttgtaaatgtttgaa 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgactctgagccatttccccaggcacttctgtgaggaagaatttttgtaaatgtttgaa 316

                                                                       
Query: 117 attaaccaaaattcaattatcataccatcaaatccgtttcatttttctacatcctctttg 176
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 317 attaaccaaaattcaattatcataccatcaaatccgtttcatttttctacgtcctctttg 376

                                                                       
Query: 177 cttttaatactgaaatggttttcctatacttctgcctataatggtaacataaattccata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttttaatactgaaatggttttcctatacttctgcctataatggtaacataaattccata 436

                                                                  
Query: 237 gagatagctcttattggctcttttttttagatttaactttttaattgatcataaa 291
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagatagttcttattggctcttttttttagatttaactttttaattgatcataaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)