BAC Information

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BAC

Clone NameMSMg01-237H10
Chromosome11 (Build37)
Map Location 51,082,220 - 51,082,809
singlet/doubletsinglet
Overlap geneClk4
Upstream geneCanx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762
Downstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237H10.T7 (MSMg01no237_h10.b1)MSMg01-237H10.TJ (MSMg01no237_h10.g1)
ACCAG402403AG402404
length751670
length of high quality
(start - end)
242 (58 - 299)590 (33 - 622)
definitionCHROMAT_FILE: MSMg01no237_h10.b1 PHD_FILE: MSMg01no237_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:18 2005CHROMAT_FILE: MSMg01no237_h10.g1 PHD_FILE: MSMg01no237_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCACCTCTGGAAAATGCTTAGTGAATCTGTCAAAACCTGTGTG
GACCCCAGCAGTTGGACTCAAGAAATTGGAGCAGCAGCCTGGAGAGGTGC
AACCATAGGATGGTGACCCCAGAGTGCAGCGCTCTTTGTGGTCACAGTTC
AGTGGCTTCGACAATGATCTTAACAGTAGATGTGGGAAGGAGTAGATATG
TGTTGTGACAACAGAGGGGGGTGGGGATATTTATTGTGTTTTTTGGCTTT
TTGTTTGAAAACACAAACGACCAACACTAAAAAACCTTTTTTTTTTTTTC
CCCCCCCCCCCCCCCTGTATTTCTTTTTTTTTTTTATTTATGAATATATA
ACCCCCCCCCCTACAAAAAAATAAAATTCTCTTGTGTGGTCGCCCCCCTT
CTTCTCTCCTATTCCTTTTATTTCTCGCTTTTTTTAACTCTTTACTTTAC
ACTAACCTCTACATTTATCTTTTATCTATTATAATGATCCTTTTTTATTT
TTTTTATCACTCTATTTTCACCTCTCTTTTTTCTCACTTCTACATTCCAC
ACTCTTTTTTTTTTTTTTTCTCTTCTCTATTTTCATTCCCCCTCTCATTT
ACGCTCTTCATTCTTTTTATACCTCCTCTCCCTTTATTTTTTTTTCCTTT
TTTCTCCCCCCTGCCCTTATAAAATTTTATACTTATCCTTCACTCCCCCT
C
AGAGGATCCGCGGAATTCTAAATCTAACCCTGCATACCTCCTAGGTGGTT
TCTAATCATATAAAGTTTACCAAAGGTTTAAAACCTGGTACTGTGTTACA
GGGAGATATTTAAGGATTTGGCATATATATATATATTACATCTACAATGG
TCTTCCTGGTATTTGAGGCAGAATAGATTAAACCTGCTGAAAGGGAGACC
AAATCAAAGGCTACTGCCAAAAGACAAATCAGGAGAAAATGTTTTATAAT
ACATATGACAAAGGGTTAAAATAATACATAATAAAAACATCTTGTAAATC
AGAAAGAAATATACTTTAGTAGAAAACAATTGACATACAAATTCTTCAGA
AAATCTGAACAAATTCACTAGAAATTCAGGTTAGGAAAACCATTTAAAAC
AGACAAAACTAGAGACAGCACCAAGGAGCATGTTATAAGCTTTCTAGAAC
AAGAAATGAGAATATGCAGCAAGAACCTTGTAAAACTTCATACCCTTTAA
CTTGAAAATGCCTCTTCTTAGAATCTACTCTCAGGAAATAGCCACAGGCA
AAGATTTGTACACAAAGACCCCTTAGGAACAGACAGAAATAATTCAGTCA
AGCCACGCAACGCTTTCCACACTGCTGTTCCTTTACACTGCTGCTGCCTC
AACTGCCCAGCCATTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_h10.g1 MSMg01no237_h10.g1 CHROMAT_FILE:
MSMg01no237_h10.g1 PHD_FILE: MSMg01no237_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:18 2005
         (590 letters)



>mm_chr11_51082212_51083201
          Length = 990

 Score = 1118 bits (578), Expect = 0.0
 Identities = 587/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacctcctaggtggtttctaatcatataaagtttaccaaaggtttaaaacctggtact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 598 catacctcctaggtggtttctaatcatataaagtttaccaaaggtttaaaacttggtact 539

                                                                       
Query: 61  gtgttacagggagatatttaaggatttggcatatatatatatattacatctacaatggtc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 538 gtgttacagggagatatttaaggatttggcatatatatatatattacatctacattggtc 479

                                                                       
Query: 121 ttcctggtatttgaggcagaatagattaaacctgctgaaagggagaccaaatcaaaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttcctggtatttgaggcagaatagattaaacctgctgaaagggagaccaaatcaaaggct 419

                                                                       
Query: 181 actgccaaaagacaaatcaggagaaaatgttttataatacatatgacaaagggttaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 actgccaaaagacaaatcaggagaaaatgttttataatacatatgacaaagggttaaaat 359

                                                                       
Query: 241 aatacataataaaaacatcttgtaaatcagaaagaaatatactttagtagaaaacaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aatacataataaaaacatcttgtaaatcagaaagaaatatactttagtagaaaacaattg 299

                                                                       
Query: 301 acatacaaattcttcagaaaatctgaacaaattcactagaaattcaggttaggaaaacca 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acataaaaattcttcagaaaatctgaacaaattcactagaaattcaggttaggaaaacca 239

                                                                       
Query: 361 tttaaaacagacaaaactagagacagcaccaaggagcatgttataagctttctagaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttaaaacagacaaaactagagacagcaccaaggagcatgttataagctttctagaacaa 179

                                                                       
Query: 421 gaaatgagaatatgcagcaagaaccttgtaaaacttcataccctttaacttgaaaatgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaaatgagaatatgcagcaagaaccttgtaaaacttcataccctttaacttgaaaatgcc 119

                                                                       
Query: 481 tcttcttagaatctactctcaggaaatagccacaggcaaagatttgtacacaaagacccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tcttcttagaatctactctcaggaaatagccacaggcaaagatttgtacacaaagacccc 59

                                                             
Query: 541 ttaggaacagacagaaataattcagtcaagccacgcaacgctttccacac 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  ttaggaacagacagaaataattcagtcaagccacgcaacgctttccacac 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)