BAC Information

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BAC

Clone NameMSMg01-237M06
Chromosome11 (Build37)
Map Location 27,974,241 - 27,974,554
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1, LOC382504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237M06.T7 (MSMg01no237_m06.b1)MSMg01-237M06.TJ (MSMg01no237_m06.g1)
ACCAG402620AG402621
length734735
length of high quality
(start - end)
318 (46 - 363)659 (77 - 735)
definitionCHROMAT_FILE: MSMg01no237_m06.b1 PHD_FILE: MSMg01no237_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:40 2005CHROMAT_FILE: MSMg01no237_m06.g1 PHD_FILE: MSMg01no237_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGATTATAGTACCTCCACAATGGGTAGAAATGGTACTTCATGGT
TATTTTCCCTGTCTTTGAGCCTTCACATTCTCTCTATCTCCTCTTCCTTA
GTGTTGTTGGAACTGATAGAAACATCTTGTTTAGGGCAAAGTACTCAAGT
ATTCTTCATCCTCAGCTCATTGGGTCTTTTCATTTATCAAAATTCACTGA
AAAGAAAGACTTCTTTCCTGAAGGCTGAGGGTTACATTTCTATAAATGCA
TAATTTATTCTAGCTAGCCTGCATGAAAAACACAAAATCCTAGTATTTTA
TTGACAATCTCTCAGCCTACACTGGCCTGGTTGAGAACTGTTCAAACTTA
CATCCCCGTAATATGTCCTTTGTTACTGCCTATTTGAGTCCCACCTGGGT
TGTTTTTGTTATGCCAGCCTGTCTTCAGAGTCCATTTCTCTTGCCCATGT
GCTTATGATCCATCTCTTCTCATGGCAGCCTCCTCTCTTTTTTTTCTTCC
TCCTTCGGATCTCTATCATCTATCCTACCTTGGTGAGATCAGGGTTCTGC
ACCTACATCAGTCTTTTTCATCATAACTTGTATTACTAACAACAAAAAAC
TGTAGGACACCAGATAATGGGACCCCCACTCTAGTCCAGGGACAGGATGC
ATCCATTAACACAAGAATCCTTCTTGATGCAAGA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGATCCACTTATATTTGACCTT
AGTACAAGGAGATAGGAATGCCTCAATTCTCATTCTTCTGCATGATAACC
ACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCAGTGG
ATGGTTTTATCTCCCTTGTCAAAGGTCAAGTGACCATAGGTGTGTGGGTT
CATTTCTGGGTCCACAATTCTATTCCATTGGTCTACTTGTCTGTCTCTAT
ACCAGTACCATGCAGTTTTTATCACAACTGCTATGTAGTACAGCTTTAGG
TCAGGCATGGTGATTCCACCAGAGGCTCTTTTATCCTTGAGAAGAGTTTT
TGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATTTCCCTTT
CTAATTTGTTGAAAAATTGAGTTGGAATTTTGATGGGGATTGCATTGAAT
CTGTAGATTGCTTTTGGCAAGATAGCCATTTTCACTATATTGATCCTGCC
AATCCATGAGCATGGGAGATCTTTCTATCTTCTGAGATCTTTAATTTCTT
TCTTCAGAAACTTGAAGTTCTTATCATACAGATCTTTCACTTCCTTAGAG
TCACACCAAGGTTTTTTTATTATTTGTGACTATTCAGAAGGGTTTTGTTT
CACTAATTTCTTTCTCAGTCTGTTTATCCTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_m06.b1 MSMg01no237_m06.b1 CHROMAT_FILE:
MSMg01no237_m06.b1 PHD_FILE: MSMg01no237_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:40 2005
         (318 letters)



>mm_chr11_27974237_27974954
          Length = 718

 Score =  538 bits (278), Expect = e-157
 Identities = 305/314 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagattatagtacctccacaatgggtagaaatggtacttcatggttattttccc 64
           |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 gaattcaagatggtagtacctccacaatgggtagaaaaggtacttcatggttattttccc 259

                                                                       
Query: 65  tgtctttgagccttcacattctctctatctcctcttccttagtgttgttggaactgatag 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 258 tgtctttgagccttcacattctctctatctcctcttcctcagtgttgttggaactgatag 199

                                                                       
Query: 125 aaacatcttgtttagggcaaagtactcaagtattcttcatcctcagctcattgggtcttt 184
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 198 aaacatcttgtttagggcaaagtgctcaagtattcttcatcctcagctcactgggtcttt 139

                                                                       
Query: 185 tcatttatcaaaattcactgaaaagaaagacttctttcctgaaggctgagggttacattt 244
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 138 tcatttatcaaaattcaccgaaaagaaagacttctttccttaaggctgagggttacattt 79

                                                                       
Query: 245 ctataaatgcataatttattctagctagcctgcatgaaaaacacaaaatcctagtatttt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 78  ctataaatgcataatttattctagctagcctgtatgaaaaacacaaaatcctagtatttt 19

                         
Query: 305 attgacaatctctc 318
           ||||||||||||||
Sbjct: 18  attgacaatctctc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)