BAC Information

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BAC

Clone NameMSMg01-237P16
Chromosome11 (Build37)
Map Location 120,025,615 - 120,173,919
singlet/doubletdoublet
Overlap gene2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1
Upstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
Downstream geneActg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237P16.T7 (MSMg01no237_p16.b1)MSMg01-237P16.TJ (MSMg01no237_p16.g1)
ACCAG402769AG402770
length721677
length of high quality
(start - end)
232 (126 - 357)293 (30 - 322)
definitionCHROMAT_FILE: MSMg01no237_p16.b1 PHD_FILE: MSMg01no237_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:56 2005CHROMAT_FILE: MSMg01no237_p16.g1 PHD_FILE: MSMg01no237_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,025,615 - 120,025,846)(120,173,627 - 120,173,919)
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTCTGGATAAGAGCCCTCAGTCTT
CCACAGGGTGGGGCAGTACTGCCCGTTTGTGAACAAAGACCAGGTGAAGA
CATAAATCAGCTGCCCTATCACATTTCCTGCCCTGAAAGCCCCTGTAAAA
CACAGGAGAAAATTGACCTGTCATGGGGATAGATGGGGCAGCGTCAGCCC
TACCTCCAGGGCGGCTGCCCGTCACCCTGGGGTCCCACCTGCCCTGTGTG
CCCTCACGCTGAGCGGACTGCTACTGCCCAGCAGCACTGTGGAGAAAAGG
CACAGCCTATTTTTTTTTGCCCCCCCGCCTCACCCCTCACCCCTCCACCC
ACCCCAGGCAGACAGGCCCAGCTGCTGAGACTGTAAGCTATAAACCGGAT
GGAGACCAGGCTCGGTGTCAGGAGACAGCTCGAGTGCCTTTTAAAAATTG
TAATCTCTTTTTATTTCCCCCACTCTCCCCTCCCTCCTCCCTCCAGACCA
TAACCTCCAGTCACTCCTCCCCTCTTCCTGTGCTGCTGGAGGTGACCTTG
GTGCCCAGACCTTAGTGTGAGGCCGCTAGAGCCAGCAAGGACGCCCTTCT
CACCTTGAATATCCGTGTCAGGAGCACAGTGTGGGAGAAGGAGGCAGGCT
GTGGCGTGCCAAGAAACTGCC
GAGGATCCGCGGAATTCCAGCATGATCCATAAAATTTGTTGTGAAGGTTG
TCTCTGAAGAGACAATATCCCTTTTATACAGAAACCTCTCAAATAAGAAT
AAACCAGCAATAAACCAGGCTTGAGACCTAAAGTACGTGACCTCTGACCT
CTGAGTTCGGCCTCATTCCTTTCCCAGATATAAACCTGCAATTTTCTAGG
AATCTCACAGGCAAGATTATAAACCCCATTATGGTAACAGACATGGCTTA
ACCTGTGTGCAACCCTCCCAACCCATGGTTTCACCACATTAGATTGTCAC
CCTACCCGACCGAACCACTTCATTATTTGCCGCACCCACCTCACTGAAGG
TGGGAGGGGGTCACTTCCAAACGCCTTGAGGAACAGAAGCCTCAGCAGTC
ACCAAGAAAGTACATATATGGTTACTGCTAGTCGCTCAAAGCAGGAAGCT
CGAGAGAAAGGCCACACTCACACCTAGGTGTGCAGGACCCTTTCCCTGGT
CACCTTTGATACTTAAAGCTGTTAGCAATCTCATCTTAATAAACTCTGTC
TCTGAATCCTGGCTTCATCTGAGAACTGCTCTGAAGGAAATGCCTCAGAC
TGCTTCAGGCACCAAGGTGGAGCTGTCTTTTGCTCCATTACTGCCGACAG
ATGAACAGACTCTCCTTGCCCCCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_p16.b1 MSMg01no237_p16.b1 CHROMAT_FILE:
MSMg01no237_p16.b1 PHD_FILE: MSMg01no237_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:56 2005
         (232 letters)



>mm_chr11_120025415_120026046
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgaacaaagaccaggtgaagacataaatcagctgccctatcacatttcctgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgaacaaagaccaggtgaagacataaatcagctgccctatcacatttcctgccctg 260

                                                                       
Query: 61  aaagcccctgtaaaacacaggagaaaattgacctgtcatggggatagatggggcagcgtc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aaagcccctgtaaaacacaggagaaaattgacctgtcagggggatagatggggcagcgtc 320

                                                                       
Query: 121 agccctacctccagggcggctgcccgtcaccctggggtcccacctgccctgtgtgccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctacctccagggcggctgcccgtcaccctggggtcccacctgccctgtgtgccctc 380

                                                               
Query: 181 acgctgagcggactgctactgcccagcagcactgtggagaaaaggcacagcc 232
           |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 acgctgagcggactgcaactgcccagcagcactgtggagaaaaggcacagcc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_p16.g1 MSMg01no237_p16.g1 CHROMAT_FILE:
MSMg01no237_p16.g1 PHD_FILE: MSMg01no237_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:56 2005
         (293 letters)



>mm_chr11_120173427_120174119
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaatttgttgtgaaggttgtctctgaagagacaatatcccttttatacagaaacctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 493 taaaatttgttgtgaaggttgtctctgaagagacaatatcccttttatacagaaatatct 434

                                                                       
Query: 61  caaataagaataaaccagcaataaaccaggcttgagacctaaagtacgtgacctctgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caaataagaataaaccagcaataaaccaggcttgagacctaaagtacgtgacctctgacc 374

                                                                       
Query: 121 tctgagttcggcctcattcctttcccagatataaacctgcaattttctaggaatctcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctgagttcggcctcattcctttcccagatataaacctgcaattttctaggaatctcaca 314

                                                                       
Query: 181 ggcaagattataaaccccattatggtaacagacatggcttaacctgtgtgcaaccctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggcaagattataaaccccattatggtaacagacatggcttaacctgtgtgcaaccctccc 254

                                                                
Query: 241 aacccatggtttcaccacattagattgtcaccctacccgaccgaaccacttca 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aacccatggtttcaccacattagattgtcaccctacccgaccgaaccacttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)