Query= MSMg01no261_d24.b1 MSMg01no261_d24.b1 CHROMAT_FILE:
MSMg01no261_d24.b1 PHD_FILE: MSMg01no261_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:35 2005
(577 letters)
>mm_chr11_112822982_112823958
Length = 977
Score = 727 bits (376), Expect = 0.0
Identities = 409/420 (97%), Gaps = 2/420 (0%)
Strand = Plus / Plus
Query: 1 cccatagctgtcttcagatgtaccagaagaaggcatcagatctcattacaggtgcttgtg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cccatagctgtcttcagatgtaccagaagaaggcatcagatctcattacaggtggttgtg 260
Query: 61 agccactatgtggttgctgggatttgaactcaggaccttccgaatagcagtcagtgctct 120
|||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 261 agccaccatgtggttgctgggacttgaactcaggaccttctgaatagcagtcagtgctct 320
Query: 121 tgcctgttgagccatcacaccagccctatttacttgtttttaacactgcttcatactgag 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctgttgagccatctcaccagccctatttacttgtttttaacactgcttcatactgag 380
Query: 181 ctatctgtggctgaatgtggaccagcagcccactgtctataagcatagctcctgggagag 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ctatctgtggctgaatgtggaccagcagcccactgtctataagcacagctcctgggagag 440
Query: 241 tggttcaagctacta-aggactgaaagactgtccctggtatgtgttacttcattgccacc 299
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tggttcaagctac-agaggactgaaagactgtccctggtatgtgtcacttcattgccacc 499
Query: 300 ctgaaggtagagagctgggtcatatcttccgacacctgaattccctcatactctgccgca 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 ctgaaggtagagagctgggtcatatcttctgacacctgaattccctcatactctgccgca 559
Query: 360 ctctgggctccccagataatacacatccaattataatggctactaatgactgaatgtgtg 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctctgggctccctagataatacacatccaattataatggctactaatgactgaatgtgtg 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_d24.g1 MSMg01no261_d24.g1 CHROMAT_FILE:
MSMg01no261_d24.g1 PHD_FILE: MSMg01no261_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:36 2005
(476 letters)
>mm_chr11_112971174_112972048
Length = 875
Score = 801 bits (414), Expect = 0.0
Identities = 451/464 (97%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 15 gggcatggttttgtgagcttataatcccagaatttaggatgcagaggcagacagactgct 74
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 875 gggcgtggttttgtgagcttataatcccagaatttaggatgcagaggcagacagaccgct 816
Query: 75 ggagcttgctatcctgccaacatagcttgcttagcgagctccagatcagtgagaggttct 134
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 815 ggagcttgctatcctgccaacatagcttgcttagcgggctccagatcagtgagaggttct 756
Query: 135 gcataaataaaagtttaaaagtggttgctgtccaaggaacgacatttgatgttgt--aca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 755 gcataaataaaagtttaaaagtggttgctgtccaaggaacgacatttgatgttgtacaca 696
Query: 193 cacacacacatggatgcacacgaacacacataaaataatcatcccacagcatcaataagt 252
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 695 cacacacacatggatgcacacgaacacacataaaataatcatcccacagcctcagtaagt 636
Query: 253 acaagattggaaactctgtaagagaatctttcctttgaatgctcgagccctgcagaaacc 312
||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 635 acaaggttggaaactctgtaagagaatctttcctttg-atgcccgagccctgcagaaacc 577
Query: 313 cttgggtatcgtgaagcagagaagtgattcagtaactatcatatataaagttagtgcttc 372
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 576 cttgggtgtcgtgaagcagagaagtgattcagtaactagcatatataaagttagtgcttc 517
Query: 373 tcatggcttcgtgggcatccacctgacaacggaactgggtccctgctgctgcctcatgga 432
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcacggcttcgtgggcatccacctgacaacggaactgggtccctgctgctgcctcatgga 457
Query: 433 gggctgggtgtgctgcccaagaaggaagaagctgaactaagcgg 476
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gggctgggtgtgctgcccaagaaggaagaagctgaactaagcgg 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
