BAC Information

Click to search

BAC

Clone NameMSMg01-261G24
Chromosome11 (Build37)
Map Location 70,803,052 - 70,803,662
singlet/doubletsinglet
Overlap geneDhx33
Upstream geneDullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp
Downstream geneDerl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261G24.T7 (MSMg01no261_g24.b1)MSMg01-261G24.TJ (MSMg01no261_g24.g1)
ACCAG403824AG403825
length838734
length of high quality
(start - end)		252 (46 - 297)611 (77 - 687)
definitionCHROMAT_FILE: MSMg01no261_g24.b1 PHD_FILE: MSMg01no261_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:50 2005CHROMAT_FILE: MSMg01no261_g24.g1 PHD_FILE: MSMg01no261_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGG
AATTCAGTCCTCTTGACCCAGCCTCCCAAGGGCTGGGATTACAGGAATGC
ATTACCTTACCATATCCACTCCAGCCAATGTCTTCTTAGATGTGACATTA
ATATTGTAAGTGACAGAAGAAAACCTACTTGATTGAGATGCTCCCCTTAA
GTCTTGGGCATATGAATACTTGGTCCTCATGGGTGGGATTGTTTGAGAAG
GATTAGGAGGGGTGGCCTTGTTAGAGGAGGTGTGTTGAGAAGGATTACCA
CCCTTCTTTCCACCCCTCCCTTTTTTTTTCTTTTTTTATATCCCCTTTAT
TCTTCTATTTATATTATTTTTTTATTTTCCCTTCACCGCTCCCATCATTT
AAATTATCACTCTCCTTTCTCACATTCTTATTTTGGGTCCCCTCTCATAT
TGGGTTAGTTACACTGCTCTTTCTCTTCCCTCGCATTTACTTCTCTTTCT
CCTTCTTTTTTTCAATATTCATATAACCCCGCCCCTTTTTCGTATTTTAT
ATTTATCTCCTTCTTCTCCCCCTCATTTTCTATATTATTTATCACCTATT
TTTCTATTTTTTTCCTTTCACCAATTTTCACTCCTTTAATTTCACCTTAT
TTCCCCTCATTTTTTATTAACCCTAATCCCCTATTTCCCCTCTTACCGTC
TCTCCCCGCTATCAATCACTGTATCCACCTCGATTTAGCATCCATTATGC
CTATTAATAACCCTATTCTTCCCAATATTATCTATTTAATGAAGAAAACT
CCAAATTTCCCCCCATCTATTCCACCTTTTTTTATTTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTATTCGGATTTGGCAGCAAGC
ATCTTTACCAGCTGAGCCATCTTGCTGGCCCTCAATTTATATTTAAATGA
ATAAAAAAGGTGCCGAGGATGCAGTAAAAAGCTCAGAGTCCTTCCTTACT
GAACTGTTCTGCCTTTGGTGTGTGTGCTCCATCAACAGGATGCCCTCCGT
TTGTCTTTAAAGCAGAGTCTTGCTTATGTATGTAACCCAGGTTGACCACA
GACAGCGATGTGGCACACACCCAGCACTAAGGACATGCTTTCAACAGGGC
TTGGTTGGCTCCAGTTGGTCGACTACATTACGTAGTAAAACTGTCTCAAA
ACAAACAGAAAAGGAACCATTAGCTTCGCCTGCTTCCACAGTCTGCCCTT
TCAGCTGCATCTGTTTCCATCACCACGGTGTCTCCTGCTCAGCTCTATTT
GTGCCCCAGAGAGAATATTCTGCGGTGCCAGCATGTGAGCATAAACTTGT
TGGTCTGTGCTCTGTGGCTCAACTTCACCTAGCTAGCACACATTTACTAG
ACCTTCAGTCCCTCCTGGTGTGGGGGAGAATTGCAGTCTCTACCATCTCT
CCAGATGTAGGTTGAAATCACTTCTGTAATCTGTAATCTGTAATATTGTT
CTAAACATTGCCTCCATCCCATACAAAACAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_g24.g1 MSMg01no261_g24.g1 CHROMAT_FILE:
MSMg01no261_g24.g1 PHD_FILE: MSMg01no261_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:50 2005
         (611 letters)



>mm_chr11_70802797_70803807
          Length = 1011

 Score = 1174 bits (607), Expect = 0.0
 Identities = 610/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtattcggatttggcagcaagcatctttaccagctgagccatcttgctggccctcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aggtattcggatttggcagcaagcatctttaccagctgagccatcttgctggccctcaat 807

                                                                       
Query: 61  ttatatttaaatgaataaaaaaggtgccgaggatgcagtaaaaagctcagagtccttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttatatttaaatgaataaaaaaggtgccgaggatgcagtaaaaagctcagagtccttcct 747

                                                                       
Query: 121 tactgaactgttctgcctttggtgtgtgtgctccatcaacaggatgccctccgtttgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tactgaactgttctgcctttggtgtgtgtgctccatcaacaggatgccctccgtttgtct 687

                                                                       
Query: 181 ttaaagcagagtcttgcttatgtatgtaacccaggttgaccacagacagcgatgtggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttaaagcagagtcttgcttatgtatgtaacccaggttgaccacagacagcgatgtggcac 627

                                                                       
Query: 241 acacccagcactaaggacatgctttcaacagggcttggttggctccagttggtcgactac 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 626 acacccagcactaaggacatgcttgcaacagggcttggttggctccagttggtcgactac 567

                                                                       
Query: 301 attacgtagtaaaactgtctcaaaacaaacagaaaaggaaccattagcttcgcctgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attacgtagtaaaactgtctcaaaacaaacagaaaaggaaccattagcttcgcctgcttc 507

                                                                       
Query: 361 cacagtctgccctttcagctgcatctgtttccatcaccacggtgtctcctgctcagctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cacagtctgccctttcagctgcatctgtttccatcaccacggtgtctcctgctcagctct 447

                                                                       
Query: 421 atttgtgccccagagagaatattctgcggtgccagcatgtgagcataaacttgttggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttgtgccccagagagaatattctgcggtgccagcatgtgagcataaacttgttggtct 387

                                                                       
Query: 481 gtgctctgtggctcaacttcacctagctagcacacatttactagaccttcagtccctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgctctgtggctcaacttcacctagctagcacacatttactagaccttcagtccctcct 327

                                                                       
Query: 541 ggtgtgggggagaattgcagtctctaccatctctccagatgtaggttgaaatcacttctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggtgtgggggagaattgcagtctctaccatctctccagatgtaggttgaaatcacttctg 267

                      
Query: 601 taatctgtaat 611
           |||||||||||
Sbjct: 266 taatctgtaat 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |