BAC Information

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BAC

Clone NameMSMg01-262D05
Chromosome11 (Build37)
Map Location 116,809,317 - 116,809,719
singlet/doubletsinglet
Overlap geneMgat5b
Upstream geneSap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11
Downstream geneLOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262D05.T7 (MSMg01no262_d05.b1)MSMg01-262D05.TJ (MSMg01no262_d05.g1)
ACCAG404372AG404373
length729712
length of high quality
(start - end)		402 (123 - 524)---
definitionCHROMAT_FILE: MSMg01no262_d05.b1 PHD_FILE: MSMg01no262_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:47 2005CHROMAT_FILE: MSMg01no262_d05.g1 PHD_FILE: MSMg01no262_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGCTGTTCACGGTGCATGTCTTTGAACCAGTGACATTAGTTTCTTTT
AACTGGATTCAGTCTTAGGACATGAGGGTGACAGGGTTGAGCCCCTGGCC
CCTTCTCAGGCTGGGCCAGCATGATCAGCCCCTGGAGGTCCTATGTCCTT
GGGACATTTTCATCGTGTCAGGCAGAAAGGTTAAAGGGGTCCAGGAATAC
AGACTGAGGAAGGATTGTTGGCCCAACTGTCCATCTGTCTGTCCATCCGT
TTGTCCATATGTCCATCCATTCTTTTATTCACGTAACAGAGAACCGCATG
CTTGTCACCTCCTTTCTGTCGGAGTCCTTGTCATTCATAAAACCCTGTCT
TGTCTGTGTGTACCGCCGCCCATTCTTTCATCTGCAAGGTGAGCTCCACG
AGGCAGTCGCACACCCACCAACACCTACGGCTCCAACATCTAGGGTCTAA
AGGCAGTCAACCAGGCCTGGCCTGGAGACCCTGTGTGCTATGCTGTGGGG
TGATCCTGGGCTGGGGTATATTGACCTACGAGCTGCTTGCTGCTCTCCTC
TGACCCCCCGCCCCCTCTGTCCTGCTCACCCCAGATCCTTGCCCACATTG
GCTTCCTGATAGAGGAGTCTGCCTTACGTGTTCATGCCAATGCCACTGTA
CGGTCGTACCTCTGACACAGTTGCCCCTG

CACATGAAGTGGTAGCCTGGCGGNGNCGGGNCGTCGTGAGCCGAGAANNA
NAGAAGGATTGCTGAAGCAGGGAAAAGACCGGACANCAAGGGAAGGGCGA
ACAGGAACTAGGCCCCAGGAGGNNGGGNCAGAAGACAGCCAACCAGCCAG
GCAGGGGGGGCGCAAGCCNNNAANCCCAGCACNAGGGAGGCAGAGGCAGG
AGAACCCCAGAGCCGGAGGCCAGCCGGGCCNACAGAGCGAGTTTTTTGAC
AGCCAGGGCTACACAGAGAAACCCTGTCTTGGGGAGGGGATCGGAAGGGC
GGGGGAATATTTTTTTTTACGNNCAAGCACCGAGAAAGGAGGACCCACAG
GGCCGGGGGCCGCCGCCCCGAGGAGGAGCCNAGACCAGAAGGCACGAGGC
CCCGGAACAAACCCACCGCCAAGAGAGAACAGAGACGGCCCAACACGCAG
CAGCACAGCCGGAGGCGACCGACGGAGGCGGCAGCAACCCGCCGCGAAAG
AGAAACCAAAACAAAACCCCCCCAGCAGACAGACAGGGGAAAAAAGACCA
ACCCACGCACCCACCCCAGGGACGGCACAGAGCGCACAACCCGCAGGACC
GCGCCAGCCGACCAGGAAAACACCCCCAAAAAAAAAAGGAGGGTCTATTT
TAATCCAGGAAGGCCCCCTGCTTCATACAGACTACCCCAGTTTCTGTTCC
TCCCTGTAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_d05.b1 MSMg01no262_d05.b1 CHROMAT_FILE:
MSMg01no262_d05.b1 PHD_FILE: MSMg01no262_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:47 2005
         (402 letters)



>mm_chr11_116809118_116809919
          Length = 802

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/403 (98%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagggtgacagggttgagcccctggccccttctcaggctgggccagcatgatcagcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgagggtgacagggttgagcccctggccccttctcaggctgggccagcatgatcagcccc 259

                                                                       
Query: 61  tggaggtcctatgtccttgggacattttcatcgtgtcaggcagaaaggttaaaggggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggaggtcctatgtccttgggacattttcatcgtgtcaggcagaaaggttaaaggggtcc 319

                                                                       
Query: 121 aggaata-cagactgaggaaggattgttggcccaactgtccatctgtctgtccatccgtt 179
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggaataacagactgaggaaggattgttggcccaactgtccatctgtctgtccatccgtt 379

                                                                       
Query: 180 tgtccatatgtccatccattcttttattcacgtaacagagaaccgcatgcttgtcacctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtccatatgtccatccattcttttattcacgtaacagagaaccgcatgcttgtcacctc 439

                                                                       
Query: 240 ctttctgtcggagtccttgtcattcataaaaccctgtcttgtctgtgtgtaccgccgccc 299
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||
Sbjct: 440 ctttctgtcggagtccttgtcattcataaaactctgtcttgtctgtgtgtactgctgtcc 499

                                                                       
Query: 300 attctttcatctgcaaggtgagctccacgaggcagtcgcacacccaccaacacctacggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attctttcatctgcaaggtgagctccacgaggcagtcgcacacccaccaacacctacggc 559

                                                      
Query: 360 tccaacatctagggtctaaaggcagtcaaccaggcctggcctg 402
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaacatctagggtctaaaggcagtcaaccaggcctggcctg 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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