BAC Information

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BAC

Clone NameMSMg01-262H12
Chromosome11 (Build37)
Map Location 84,911,718 - 84,912,072
singlet/doubletsinglet
Overlap geneUsp32
Upstream geneTada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, LOC668794
Downstream geneLOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262H12.T7 (MSMg01no262_h12.b1)MSMg01-262H12.TJ (MSMg01no262_h12.g1)
ACCAG404561AG404562
length789733
length of high quality
(start - end)
133 (74 - 206)355 (74 - 428)
definitionCHROMAT_FILE: MSMg01no262_h12.b1 PHD_FILE: MSMg01no262_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:08 2005CHROMAT_FILE: MSMg01no262_h12.g1 PHD_FILE: MSMg01no262_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATCCGCGGA
ATTCACTTTGTATATCAGGATGGCCTCGAACTCATAAATCCGCCTGCCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGTCCGA
ATATGTACTCTTGAGTGTGTAATCAGAGAACTGATCCCTCAGCTCAGGAA
CTTGAGAGTGCCTGGGTTAGTTCTACAGTATCCCTGAGATGGCTATCATG
TGGAAGAACAATCACCGTTGCCTGCTATCTCTGCTCTGCAAACGTACTAA
TTCCACCATTACAGTGGCCTTTTCTGCCTCAGTAACTGTCAGAGCTTAAA
TATTCAAGGAGACTACGCGCGCTCGCGTACCTTTTAGTTAATATTTATTA
TAAGTGCATAGAAAGTATGGCGCCCAAAGCTAATGATTAGTTTTATTCCA
CTTTGTACCCCATAAGAGAATTATATCACGGCGTTTTTTGTATACGCCTA
GGTAGTCGTCGACTATCCTTCCTTCTATTTTATTTTTATACTCTCCCTTT
ATTATTTCTTTATTCTTTTTTTTCTTTTTTACACTATACTATCTATTTTT
TATTATATTTCTCCGCTTACGAGGGTTTATTATCTTCATTATCTACTACC
GGCTCTCTGATTTTTCTTTATTTTTTCTACCTCATCTTCATGCCCATTGC
ATCTTCCAGGTGATTTGACCTCTCTCTCATATTATTTATATTAAGATCTT
TTCAGTCTGTCCCTACTCGCCTACCTCTTTTCTTTTTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGACACGTGCTATATGCAACTTCCAG
GCACTAGGACCTGGAAATCTTTGGGAGACATTGTTTAGTCTACCACAGTC
TCTAAACACAGATGATGTTATAGTTCCAAGAGAATAAGGTGAATTTCCAT
TGTTTCCTCACTTCCTCTCTGTCTTCTTTCCTCCTATATCTCCTCCATGA
ATACAGACAAGGTAACCTCAAGTGTGTGACAAGCAAGCAAGCTAGAGAAG
TCTCCATCTCTCTGAATGAGCTCCAGAAGATTATTTTGTAACTACTGGGT
TTGCCTAAACCCTAAAAGGCAAACCAGTCTGAACTAAATAAAACTGAGTC
TAAGATAAGCCGTTGTGTGATAAATACAAATGGGGATACACAGGCTTTGA
AAGGTAACTGTCATTATAAAACAACCAATAATGACAAGTACAAAGTTATA
GCCTGAGTCCACTGTCATCATACTTTGATAAAACATGTTAACATCTCTGA
GAACTAGAGTCTCTGAACATTCCAAATGTCTAGACTGGAATTAAAAATTC
CTCACCATAAAAGAACCAAGAAAATTTATACCCAATTAGGAAATAATAAC
AGGTACTAACAAACTGATGACCCATGTACTATAGTTACTATATAAGACTT
CTAATAAGCCTATCATTAAAAACCGTCAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_h12.g1 MSMg01no262_h12.g1 CHROMAT_FILE:
MSMg01no262_h12.g1 PHD_FILE: MSMg01no262_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:08 2005
         (355 letters)



>mm_chr11_84911518_84912272
          Length = 755

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacacgtgctatatgcaacttccaggcactaggacctggaaatctttgggagacattg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacacgtgttatatgcaacttccaggcactaggacctggaaatctttgggagacattg 260

                                                                       
Query: 61  tttagtctaccacagtctctaaacacagatgatgttatagttccaagagaataaggtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagtctaccacagtctctaaacacagatgatgttatagttccaagagaataaggtgaa 320

                                                                       
Query: 121 tttccattgtttcctcacttcctctctgtcttctttcctcctatatctcctccatgaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccattgtttcctcacttcctctctgtcttctttcctcctatatctcctccatgaata 380

                                                                       
Query: 181 cagacaaggtaacctcaagtgtgtgacaagcaagcaagctagagaagtctccatctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacaaggtaacctcaagtgtgtgacaagcaagcaagctagagaagtctccatctctct 440

                                                                       
Query: 241 gaatgagctccagaagattattttgtaactactgggtttgcctaaaccctaaaaggcaaa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagagctccagaagattattttgtaactactgggtttgcctaaaccctaaaaggcaaa 500

                                                                  
Query: 301 ccagtctgaactaaataaaactgagtctaagataagccgttgtgtgataaataca 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagtctgaactaaataaaactgagtctaagataagccgttgtgtgataaataca 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)