BAC Information

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BAC

Clone NameMSMg01-262L17
Chromosome11 (Build37)
Map Location 121,450,447 - 121,450,928
singlet/doubletsinglet
Overlap geneTbcd
Upstream geneThoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Zfp750
Downstream geneB3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262L17.T7 (MSMg01no262_l17.b1)MSMg01-262L17.TJ (MSMg01no262_l17.g1)
ACCAG404753AG404754
length754711
length of high quality
(start - end)		515 (64 - 578)485 (78 - 562)
definitionCHROMAT_FILE: MSMg01no262_l17.b1 PHD_FILE: MSMg01no262_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:27 2005CHROMAT_FILE: MSMg01no262_l17.g1 PHD_FILE: MSMg01no262_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CAATTCCCCTGAAATGAAATCCCACCAACCTGGAAGCTTGCCCCAAGACC
AGGTCACAGAATTCCACCAATCTTAGGCTTCCCTGGAAAGCTCCTCCCAC
GCCCTAGAAACCCTATATAGAGCCTGCCATCTGCCCAATTCCCCGATGCT
TCTCACCCAATTAGAGGCAGCCAGCTACCTGTAACCTCGTGGTTTTCTAC
CCAGCTCCTTTGTTCCCTAGAATAATGACTCTGAGACTTAATATTTCATA
AATAAGTGCTTATGTCAAAAGAATTGTTCCCTGACCAGCTCATAACTTAA
TTACCTGTTTATTCTATCCTAAGTCCCGCCACCTGTTTGGTTCTCTCTCC
CCAGGCTCGGTTTATTGTAAGAATGCTACATGGCTATCTTCTCAGTTTCA
TGAATCTGTCTCTTCAGAGTTCAGGGCAAATCTCCCCAGCTTGTGACTCT
TTCCCAAAATCCCCCAGGCCTTCTCTGCCAGAACTCCCACCTCCTTTTTC
CTGCCTCAGCTCATTGGCCATAGGTTGTTGCTGGCTTTATTTCCTTATTT
GTCTGTTTGCTTGATTGATCTAGCCACAAAGCGAACACGAAAACCTCTCT
ATATCCATCCTCTGTTGCTCCACCCTCTAAAAAAGCCTTGAACGATATTT
TGTCCATTTTCTACCCCCTCTCCCCTACCTTTTGCTTCCGCATTTCCATC
ATTN

NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTACACAGA
GAAACCTGTCTTGGAAGAAAAAAAAAAAAGCCCCTCTCATTCCCTTCATC
TCTCTTTTCCTCCTGGGACCCAGAAGTCCAACCTGTACCTTCTGCCCAGC
AATTGGCTCGGTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTAAATAC
ATGCAACATCAAACTACAAGCTAAAATAAGCCTTCCTTTCTGGTATTTTT
CTGTTTTGTTTTTTTCTTTCTGATATTTTGAAATAGCAATGGAAGCAGTT
CAGTGACCCAGGCCCTGAGGTCAGTCTTGTCTCACAAAATGACAACTACA
ACAGAAAAAACAAAATTACCTACCCCCCAAACAATGGCTGTCCTGGACCC
AAATATACATTCCCCAAGGAAAAAAGTCTCAAAGGCTACATAGTCAGAGC
GCTTGAATGAACACCTAGCGGCACACAAGCATAGGACAGGTGAGCACCTG
GGGTTTATAGATGGAGGGCAAGTATGCAGGCTCCATAAATGTTGGTGGAT
TCACCTTGAATCCCCAGGTATAAGGTAGAAGAACACTAGGGTAACACCCC
ATGTATAATTTTTTTTTTTTGACTTTCCAACTTTCCGATAGTTAAAACAC
CAAATACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_l17.g1 MSMg01no262_l17.g1 CHROMAT_FILE:
MSMg01no262_l17.g1 PHD_FILE: MSMg01no262_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:27 2005
         (485 letters)



>mm_chr11_121450075_121450959
          Length = 885

 Score =  861 bits (445), Expect = 0.0
 Identities = 474/491 (96%), Gaps = 15/491 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccaaggctacacagagaaacctgtcttggaag-aaaaaaaaaaaagcccctc 59
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 854 caggacagccaaggctacacaaagaaacctgtcttggaagaaaaaaaaaaaaagcccctc 795

                                                                       
Query: 60  tcattcccttcatctctcttttcctcctgggacccagaagtccaacctgtaccttctgcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tcattcccttcatctctcttttcctcctgggacccagaagtccaacctgtaccttctgcc 735

                                                                       
Query: 120 cagcaattggctcggtcttcttcttcttcttcttttttttttttttttaaatacatgcaa 179
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 734 cagcaattggctcggtcttcttcttcttcttc----ttttttttttttaaatacatgcaa 679

                                                                       
Query: 180 catcaaactacaagctaaaataagccttcctttctggtatttttctgttttgtttttttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 catcaaactacaagctaaaataagccttcctttctggtatttttctgttttgtttttttc 619

                                                                       
Query: 240 tttctgatattttgaaatagcaatggaagcagttcagtgacccaggccctgaggtcagtc 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttctgatattttgtaatagcaatggaagcagttcagtgacccaggccctgaggtcagtc 559

                                                                       
Query: 300 ttgtctcacaaaatgacaactacaacagaaaaaacaaaattacctacccccc-----aaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||     |     |||
Sbjct: 558 ttgtctcacaaaatgacaactacaacagaaaaaacaaaattaccta-----cttaggaaa 504

                                                                       
Query: 355 caatggctgtcctggacccaaatatacattccccaaggaaaaaagtctcaaaggctacat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caatggctgtcctggacccaaatatacattccccaaggaaaaaagtctcaaaggctacat 444

                                                                       
Query: 415 agtcagagcgcttgaatgaacacctagcggcacacaagcataggacaggtgagcacctgg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtcagagcgcttgaatgaacacctagcggcacacaagcataggacaggtgagcacctgg 384

                      
Query: 475 ggtttatagat 485
           |||||||||||
Sbjct: 383 ggtttatagat 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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