Query= MSMg01no262_n23.b1 MSMg01no262_n23.b1 CHROMAT_FILE:
MSMg01no262_n23.b1 PHD_FILE: MSMg01no262_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:37 2005
(724 letters)
>mm_chr11_86063432_86064555
Length = 1124
Score = 1297 bits (671), Expect = 0.0
Identities = 709/725 (97%), Gaps = 8/725 (1%)
Strand = Plus / Plus
Query: 5 gaattctacccttc----ttactcactggcagagcaagtagctctgggtccaatcctaaa 60
|||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctacccttcaaagtt---cactggcagagcaagtagctctgggtccaatcctaaa 259
Query: 61 cacacataaataaaaacaaaataaaaataaatgtaaataaactatacattacaagaaacg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cacacataaataaaaacaaaataaaaataaatgtaaataaactatacattacaagaaaca 319
Query: 121 aaggcaattcaatggagagcagcagaaatactaagtgtacagctagagcttctccccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaggcaattcaatggagagcagcagaaatactaagtgtacagctagagcttctccccaca 379
Query: 181 tctgagaaaggacttaaaatcagctgggcatgccagcccacacagtgataccaacacagt 240
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 380 tctgagaaaggacttaaaatcagctgggcatggcagcccacacagtgatactaacacaga 439
Query: 241 gaagagggagataacttaaagttcaaggttaccaggctacacagtgagaccctgct-aaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 gaagagggagataacttaaagttcaaggttaccaggctacacagtgagaccctgcttaaa 499
Query: 300 aaaaatgagaaaaaggtgctggtgacatagctcagcaagacaagatgcttagcgccacat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 aaaaatgagaaaaaggtgctggtgacatagctcagcaagacaagatgcttagcaccacat 559
Query: 360 gcacacccatatgcaaacacacacaaactaaacaaggaaataaatcaaaggaaaaaagaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcacacccatatgcaaacacacacaaactaaacaaggaaataaatcaaaggaaaaaagaa 619
Query: 420 ttaactacttaaaatgaaagcagtaagaatgtcatctggacttataatacacattactca 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaactacttaaaataaaagcagtaagaatgtcatctggacttataatacacattactca 679
Query: 480 aatatatgataaaaaatgatacaaaggaaagagacaaaaataacatggcatacctaacca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatatatgataaaaaatgatacaaaggaaagagacaaaaataacatggcatacctaacca 739
Query: 540 ccacaataattgtattaaatggctaatataacgtgtctacacacttcagttaaacgacag 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 740 ccacaataattgtattaaatggctaatatagcgtgtctacacacttcagttaaacgacag 799
Query: 600 actggtctgggctgtagcttaggcactgggtcctacccttgcccagaaggagggaaagca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 actggtctgggctgtagcttaggcactgggtcctacccttgcccagaaggagggaaagca 859
Query: 660 tagcactaagcatggtgccatgcacctcttaacaccagccccactcagaaggcagaggca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 860 tagcactaagcatggtgccatgcacctcttaacaccagccccactcagaaggcagagaca 919
Query: 720 aaaga 724
|||||
Sbjct: 920 aaaga 924
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space: 795396
Effective search space used: 795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no262_n23.g1 MSMg01no262_n23.g1 CHROMAT_FILE:
MSMg01no262_n23.g1 PHD_FILE: MSMg01no262_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:37 2005
(634 letters)
>mm_chr11_86231743_86232776
Length = 1034
Score = 998 bits (516), Expect = 0.0
Identities = 525/528 (99%)
Strand = Plus / Minus
Query: 1 caggcaagccaccacagccacctgacctttacatgggtttccaggacccaaacgctagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caggcaagccaccacagccacctgacctttacatgggtttccaggacccaaacgctagtt 469
Query: 61 ctcccatattctctgcacacactacctacacattgatctctctcctcagcacgattgtag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctcccatattctctgcacgcactacctacacattgatctctctcctcagcacgattgtag 409
Query: 121 atttaaacacaaaggtgcttgctcataggttcctctggttgcaatatacaaaagctcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atttaaacacaaaggtgcttgctcataggttcctctggttgcaatatacaaaagctcact 349
Query: 181 taaacccctccagtgatgctggataaggttcaccatgagatgcgcctctgcatgacaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taaacccctccagtgatgctggataaggttcaccatgagatgcgcctctgcatgacaccc 289
Query: 241 tgccctttgctctgccatcattcctacactgctttataattatctatctgcacattctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgccctttgctctgccatcattcctacactgctttataattatctatctgcacattctaa 229
Query: 301 tcttcatgcttgaccccaataaattcatgatttttctcgcttgtttattattatatcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcttcatgcttgaccccaataaattcatgatttttctcgcttgtttattattatatcttt 169
Query: 361 agtgcaaagaacagtgtctgacaaatgaggaaatgctgacgaatgagtcactgaagtaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 agtgcaaagaacagtgtctgacaaatgaggaaatgctgacgaatgagtcactgaagtaaa 109
Query: 421 acataggaggcttgaaatggggctcggttggttgagtgcttgcttaatgggtaggaagct 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 acataggaggctggaaatggggctcggttggttgagtgcttgcttaatgggtaggaagct 49
Query: 481 gtcctaggtttgatccccagaactacttaaactcgctacccagagcag 528
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 48 gtcctaggtctgatccccagaactacttaaactcgctacccagagcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
